BAC Information

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BAC

Clone NameMSMg01-422M06
Chromosome6 (Build37)
Map Location 58,898,774 - 58,899,206
singlet/doubletsinglet
Overlap geneD430015B01Rik
Upstream geneLOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5
Downstream geneTigd2, Gprin3, EG634166, EG627108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422M06.T7 (MSMg01no422_m06.b1)MSMg01-422M06.TJ (MSMg01no422_m06.g1)
ACCAG517078AG517079
length729732
length of high quality
(start - end)
528 (63 - 590)507 (61 - 567)
definitionCHROMAT_FILE: MSMg01no422_m06.b1 PHD_FILE: MSMg01no422_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:17 2005CHROMAT_FILE: MSMg01no422_m06.g1 PHD_FILE: MSMg01no422_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXATTCAAGAAGAGCCGCGGAATTCATTGA
GTTACCAGGAAGACTTTCACCAAGTTCTCACTCATTCTTTCCATTCTCAT
TCATCCCCAAGAGATCACATTAAAAGTATAAATAACCTTAAAAATAACCT
TAAAAGTCCTCCAGTCTTGGCAAATTTAAACACATGAAAATTTCAGTCTC
TTTAAACTATCCAATCTCTTTTAAAATCTGAAGTCTCTCATCTGTGGGCT
CCTGTAAAATCAAAAATAAATTTAATACTTTCTTACTTTAAGAGGGAAGA
ACTAGGCACAGTTTTTATCATACCAAAGAAAAGTGTAAATACCTCAACAT
CCAACATGGGAGATCCACTAAGAATATTCTGGGCTCCTCCAAGGGGCTTG
GGACATTTCCCTGGCTCTGCCCTTTGCAACACACGTAGCTTGTCTTCTTG
GCTCTGACTGGCTCCACCCCAAGGCTGCTGCTGTTCTTGGAGATTGTCTT
ATGCTACTGGCATCTCTAAAATGCTGGAGTCTATTCCTGCAAGTAGGATT
AATTTTCACCAATAGACTCTCCTGTGTTCTTTTTATAGAGCCAGGCCCCA
ACCTTTCTACATGCTCCATCACCCCTGGGCCTTCCACTTCTACTGAAACC
AAATTTCTCTCCTGGCTTCTCACATTGCCCAATCTCAGTCACTTTTCTCT
GACCCCTTCATCCTTCTAAACCCTGTATC
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTTCAAGAAATTCTGATGGTTTGTTTGTTTGGTACATACATGTTTAGGAG
TGTGATAAATGGCCCATAAATTCAATCATGTGCCAAATGGCTCGTCAGAA
TGCCCTTACCAGCAATAAGAACTGGCATGTTAGCTATTATGATAAGAATG
TGGTAGTAATAATATTACCTTTTATTTCATGTGAAATGACTTCTGAGTCA
CCTTGCTGTCCCAACAGCCATTTTTAATGAAGTAACCAATTGCAAATGAA
GTGAGCAATTTTTATTTCCATTTCATATGACACATCCTAGAAGCAGAAGT
ATTTCAGCAACTCTTCAAACCTAAATAATGAAGATGAATGAAAAGATCAT
TATTGTTGCTAACAGCAGGAAGTAGTACCCTGTTAGCTTGTAAAAGATAT
CCAACGTGATTTACTGTTGATCGTATTAAGAAAGGCAGATGCCAAAGCCA
CACAGGGCAACATATTTACATAATCTAGAACTGTCTTTGAAGGTGACTCT
TCCCAAAACTCTGAGAGAAATGTTCAAGCCGCATATCTTACACCATTCCC
TACCTGAGAAACTTGCTTTCTCATTCATGGCATGGNGATGGTAAGTAGAT
CTCCTCTACCAAGCCTAAAAAGAAACTTTACCTTATTGTGCCCTGATGTA
CCCAAAGTAAACCCTGCATACTCATCTGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_m06.g1 MSMg01no422_m06.g1 CHROMAT_FILE:
MSMg01no422_m06.g1 PHD_FILE: MSMg01no422_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:17 2005
         (507 letters)



>mm_chr6_58898574_58899481
          Length = 908

 Score =  775 bits (401), Expect = 0.0
 Identities = 425/433 (98%), Gaps = 1/433 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgatggtttgtttgtttggtacatacatgtttaggagtgtgataaatggcccataaa 60
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 633 ttctgatggtttgtttgtttggtatatacatgtttaggagtgtgataaatgggccataaa 574

                                                                       
Query: 61  ttcaatcatgtgccaaatggctcgtcagaatgcccttaccagcaataagaactggcatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttcaatcatgtgccaaatggctcgtcagaatgcccttaccagcaataagaactggcatgt 514

                                                                       
Query: 121 tagctattatgataagaatgtggtagtaataatattaccttttatttcatgtgaaatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tagctattatgataagaatgtggtagtaataatattaccttttatttcatgtgaaatgac 454

                                                                       
Query: 181 ttctgagtcaccttgctgtcccaacagccatttttaatgaagtaaccaattgcaaatgaa 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttttgagtcaccttgctgtcccaacagccatttttaatgaagtaaccaattgcaaatgaa 394

                                                                       
Query: 241 gtgagcaatttt-tatttccatttcatatgacacatcctagaagcagaagtatttcagca 299
           ||||||||||||  | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 393 gtgagcaattttaaaattccatttcatatgatacatcctagaagcagaagtatttcagca 334

                                                                       
Query: 300 actcttcaaacctaaataatgaagatgaatgaaaagatcattattgttgctaacagcagg 359
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 333 actcttcaaacctaaataatgaagatgaatgaaaagatcgttattgttgctaacagcagg 274

                                                                       
Query: 360 aagtagtaccctgttagcttgtaaaagatatccaacgtgatttactgttgatcgtattaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aagtagtaccctgttagcttgtaaaagatatccaacgtgatttactgttgatcgtattaa 214

                        
Query: 420 gaaaggcagatgc 432
           |||||||||||||
Sbjct: 213 gaaaggcagatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 908
Length adjustment: 10
Effective length of query: 497
Effective length of database: 898
Effective search space:   446306
Effective search space used:   446306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)