BAC Information

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BAC

Clone NameMSMg01-422M09
Chromosome6 (Build37)
Map Location 10,913,008 - 10,913,253
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264, LOC100040285, LOC667650
Downstream geneAA545190, Ndufa4, Phf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422M09.T7 (MSMg01no422_m09.b1)MSMg01-422M09.TJ (MSMg01no422_m09.g1)
ACCAG517084AG517085
length738732
length of high quality
(start - end)
249 (62 - 310)249 (62 - 310)
definitionCHROMAT_FILE: MSMg01no422_m09.b1 PHD_FILE: MSMg01no422_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:18 2005CHROMAT_FILE: MSMg01no422_m09.g1 PHD_FILE: MSMg01no422_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCCGCTAAACGACTCACTATTGCGATAGAATCCGCGGAATTCCACCTT
TTGCCCATGACCACTTCTGTTTTATTTGTTCTTATAGCCTGCGGATGATC
ATTGTAGATGAATTAAATGACATTCATCCTCTTCACACAAAGTAATGTGA
TAAATACTCTCACAAACAAACAAACAAACAAAGATGTGTATTGATTAATA
GAATCATAAAAAGCAAAAGAATTGCAATAAGTATTATTTTTCATGCAAGA
TTCTAGGTAAGCATGGACTTAACTCAGGATATCATCACTACTTTTAAAAA
GCCTTAATATTATCCTAATAGTTCTGATTGTTGAAGTACTCATTTGGTAT
TCTTTTGCTATGATAAAATACTCTGACTGAAATCAATCTGAGAAGGAATA
GATTTATTTGACTTACATTCCTAGGCCACAATATAACATTGAGTGACATC
CAATTAGGAGTCTCAGCAGGAACTCTGAGGAAAATCAAGGAAGGATGTTG
CTTGCTGGCTTGCTCTCTGGATAACTCACTAGCTCATTCTTAGATTAACT
TCTTATATAGCTCACAAGTGCTTTGCTTAGGGGTGGTGCCACCCACAGCG
TCGCTTTCTATATTAAAATTAACAATCAATAATGATGGTTCCCCGATCTT
TTTTATTTTTACAACCCCCTCAAATTTGTTTCCCTCTATTCTTCTTCTTT
CTTCCTTCTTCATTCTTCATACAACACTTTTTGCTTTG
GTAGGCCTGGAGGCCGCCTGGTTTCAGAAAGGAGGTGAACTATAGAAGGT
TTCAAGAAATCTGGGTCTATCCCTAAACATGATAAAAGCAATCTATAGCA
AACCAGTAGCCAACATCAAAGTTAAAGGTGAGAAGGTAGAAGCAATCCCA
CTAAAATCAGGCACTAGACAAGGCTGCCCACTTTCTCTCTTCCTATTCAA
CATAGTAGTTTAAGTCCTAGCCAGAGAAATTCGATAACAAAAAGAGATCA
AGGGGATACAAATTAGAAAGGAAGAAGTAAAAATATCAATTTTTAAAGAT
GATATGATATGTATATATAAGTGACTAAAAATTCCACAACAGAACTCCTA
AACCTGATAAACAGCTTCAGTGTAGTAGCTGGATATAAAATTAACTCAAA
TAATTCAATGGCATTTCTCTACACAAAGGATAAACCGGCTGAGAAAGAAA
TTAGGGAAAAAACACCCTTCACAATAGTCACAAAGTATATAATATACCTT
GGTGAGACTCTAAGGAAGTGAAAGATTTGTATGATAAGAACTTCAAGCCA
TAGAAGATAGAAATTAAAGAAGATCTCAGAAAATGGAAAGATCTCCCATG
CTCATGGATTGTCAGGATCAATATAGTAAAAATGGGTATCTTTGCCAAAA
GCAATCTACAGATTCCATGCAATCCCCATCAAAACTCCAACTCAATTCTT
CAATGAAATTAAAAAGAGCAATTTGCAAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_m09.b1 MSMg01no422_m09.b1 CHROMAT_FILE:
MSMg01no422_m09.b1 PHD_FILE: MSMg01no422_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:18 2005
         (249 letters)



>mm_chr6_10912954_10913602
          Length = 649

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttctgttttatttgttcttatagcctgcggatgatcattgtagatgaattaaatgac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 300 cacttctgttttatttgttcttatagcctgcggatgatcattgtagatgaattagatgac 241

                                                                       
Query: 61  attcatcctcttcacacaaagtaatgtgataaatactctcacaaacaaacaaacaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 attcatcctcttcacacaaagtaatgtgataaatactctcacaaacaaacaaacaaacaa 181

                                                                       
Query: 121 agatgtgtattgattaatagaatcataaaaagcaaaagaattgcaataagtattattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 agatgtgtattgattaatagaatcataaaaagcaaaagaattgcaataagtattattttt 121

                                                                       
Query: 181 catgcaagattctaggtaagcatggacttaactcaggatatcatcactacttttaaaaag 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 caggcaagattctaggtaagcatggacttaactcaggatatcatcactacttttaaaaag 61

                 
Query: 241 ccttaa 246
           ||||||
Sbjct: 60  ccttaa 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)