BAC Information

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BAC

Clone NameMSMg01-422P02
Chromosome6 (Build37)
Map Location 69,126,131 - 69,126,712
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75
Downstream geneIgkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422P02.T7 (MSMg01no422_p02.b1)MSMg01-422P02.TJ (MSMg01no422_p02.g1)
ACCAG517214AG517215
length738727
length of high quality
(start - end)		586 (37 - 622)569 (68 - 636)
definitionCHROMAT_FILE: MSMg01no422_p02.b1 PHD_FILE: MSMg01no422_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:30 2005CHROMAT_FILE: MSMg01no422_p02.g1 PHD_FILE: MSMg01no422_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:30 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCA
ACCATAACTCACTTGGAAACTCACAACTCTCTGTAACTCAAGTTCCAGAA
TATTCACTATCTAACACCTCCTTTTGGATTCCTTGGACTATGAATATGAT
GCATAGTCATTTATGCAAGGAAAACAAATATGGACATAAAAGAAAATAAG
AAAATATGCCTCCTCCTTTAATTATAGAACATGAATTAATATAATATGAA
TATTATTTCCTTGGCAAAGGAGGAATATTTTAAGTTTATGATATTGCTGT
GCTCCATCACCACTACACACATTGAAATTGAACACAGCAATCCAACAGAA
CACAAGAAATGGAGAAACATTTATTTGCATACTTTAGGAATCTCATAAAT
GCATGAAAGTGGAAGCCATAATATACATGCAGAGGATGTGGTTGAGACCT
GTGAAGACCCTGTGCATGTTCCTTCATTTCTGTAGGCTCATGTGGTCTTT
GCTCATATCGATTACGAGGGCTTTGTTTCTTGGTGTTTCCATCTTTTCTG
CCTCTTCTTTCTGTCTCCATTTTACTGGGGTTCTTGTAGCTCCAAGAAGA
GGGATTTCATTCAGACTTCCCGGTTAGTACTGAATGTTTCTAGCCTCAGC
TGTGCTAAGTTCTGGGGACTACAAAGTCTGGNAACCTCCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCNCTCTCTCTCTCTCT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGATCATTTTAGTGAACAAATCTTAGAGACA
TAAGGTCACACTAATGAGCAACATATTTAAGGACATTTGAAGAACAAATT
GACAAACAAAAACCCTGAGAATTTATACTTCCTTTGAATAAATATCATAG
TCTAACTTGAACAAAATTTGACGTGATTAAATATTGCAAGTTTCAGAGTG
CAGACTGGAGGAGATTGCACACAATACGCAGACTTTTTAAAATATTATGT
TTATCCTAATAGTTTTGCATCAAAGATAATTCAGAGCCAGTTACAAAGTG
ATCTATGTTGTCAATGTTCCATATCGTGATACATACCTTCCACCATGCTT
TTTCATTTGAGTGAAATATTCTCTTTTTTTTTTTTTTTTTTTTTTTTTGG
AGACAGGGTTTTTCTGTATATTTCTGGCTGTCCTGGAACTCACTCTGTAG
AACAGGGTGGCCTCGAACTCAGAAATCCACCTGCCACTGCCTCCTGAGTG
CTGGCATTGGAGGTGTGTTCTACCACACCTGGCCCTGAGCTAAATATTCT
AATAAGGTTCATTTTTAAATTTGGTTTCCTTAATCTTACTCCCACTTTTA
ATTGTTACAAAATTTCAATTTTGGTCTACCACACGAATGAAGTTTCTGGT
GCCAAGTATTCACCGATAAATGAGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_p02.b1 MSMg01no422_p02.b1 CHROMAT_FILE:
MSMg01no422_p02.b1 PHD_FILE: MSMg01no422_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:30 2005
         (586 letters)



>mm_chr6_69126049_69127034
          Length = 986

 Score = 1064 bits (550), Expect = 0.0
 Identities = 574/582 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcaaccataactcacttggaaactcacaactctctgtaactcaagttccagaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 664 gaattcagcaaccacaactcacttggaaactcacaactctctgtaactccagttccagaa 605

                                                                       
Query: 65  tattcactatctaacacctccttttggattccttggactatgaatatgatgcatagtcat 124
           ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 604 tattcaccatctaacacctcctttttgattccttggactatgaatatgatgcatagtcat 545

                                                                       
Query: 125 ttatgcaaggaaaacaaatatggacataaaagaaaataagaaaatatgcctcctccttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttatgcaaggaaaacaaatatggacataaaagaaaataagaaaatatgcctcctccttta 485

                                                                       
Query: 185 attatagaacatgaattaatataatatgaatattatttccttggcaaaggaggaatattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 attatagaacatgaattaatataatatgaatattatttccttggcaaaggaggaatattt 425

                                                                       
Query: 245 taagtttatgatattgctgtgctccatcaccactacacacattgaaattgaacacagcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 taagtttatgatattgctgtgctccatcaccactacacacattgaaattgaacacagcaa 365

                                                                       
Query: 305 tccaacagaacacaagaaatggagaaacatttatttgcatactttaggaatctcataaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tccaacagaacacaagaaatggagaaacatttatttgcatactttaggaatctcataaat 305

                                                                       
Query: 365 gcatgaaagtggaagccataatatacatgcagaggatgtggttgagacctgtgaagaccc 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 304 gcatgaaagtggaagccataatatacatgcaaaggatgtggttgagacctgtgaagaccc 245

                                                                       
Query: 425 tgtgcatgttccttcatttctgtaggctcatgtggtctttgctcatatcgattacgaggg 484
           |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct: 244 tgtgcatgttccttcatttctgtatgctcatgtgatctttgctcatatcaattacgaggg 185

                                                                       
Query: 485 ctttgtttcttggtgtttccatcttttctgcctcttctttctgtctccattttactgggg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ctttgtttcttggtgtttccatcttttctgcctcttctttctgtctccattttactgggg 125

                                                     
Query: 545 ttcttgtagctccaagaagagggatttcattcagacttcccg 586
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ttcttgtagctccaagaagagggatttcattcagacttcccg 83


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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