BAC Information

Click to search

BAC

Clone NameMSMg01-423D03
Chromosome6 (Build37)
Map Location 101,201,972 - 101,368,681
singlet/doubletdoublet
Overlap genePdzrn3
Upstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423D03.T7 (MSMg01no423_d03.b1)MSMg01-423D03.TJ (MSMg01no423_d03.g1)
ACCAG517408AG517409
length742740
length of high quality
(start - end)
496 (59 - 554)577 (65 - 641)
definitionCHROMAT_FILE: MSMg01no423_d03.b1 PHD_FILE: MSMg01no423_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:49 2005CHROMAT_FILE: MSMg01no423_d03.g1 PHD_FILE: MSMg01no423_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,201,972 - 101,202,467)(101,368,105 - 101,368,681)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGTTTT
CTTGCTCGGGATGGTTTGTGTTCAAACAGCAAATGGAATTTTTCCATCTA
ATCTGTCTGTCTCCAGATCCCTTCCTCCAAAAGAAAACCACACAATGCAG
TGAAAGAGGCATCATGCTGATTCTGAGAACTGGGGTCACCATTTCTCCTC
CTAGAGTTCGTCCTCTTCTGGGCTTGAAACAGTGCCCATTCGACTCAGCA
GCTCCCAGGGACTTGCCAAATTTCAGAATTGTCTTGAAACCAACAATAGG
CAGAATATGAAACAGGAACATTCAGATTTTTAGTCTTCTCTTGCAGACAC
AAAAGCGCAAGGGCCGTCTGCTCAGCCACGCAGCAGCTAGCTGTGAGCCT
CGGCTTATGTCACGGGAGCAGCAGTGTTCCTCACACTGTCATACTTCCCA
CGACACCCACACTCGGGACTGGTCTCTGTGATTTTTAAGAGGCACTGAAG
TGTATGACTTTGGTTCTGCACCTGCCCTGGAAAATGTATGATTGCCAGAT
TATCTAGAGGTAGGCGAGGAGATTTTCATTTGCTGTCTGTATGACAGAGC
TGGGGCCAGTGACTGGGTTCCGCGTCAGTGTTGAATCTAATTCTTCCTCT
TTTCCGCCCCTATTATGGAGGTACATGGTGAATATAATATTTATACGTAT
ATCCTTCGCCCGCCGTTTCCCATTTTTTTCCCCTTTTTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATAGGGAGTGTGAGGCAATTACAAGTGGTAGATAGT
ACCAAGGGTGCTGTAAAGATGGCCCAAATTTGAAGGGGTATCCACAGCAA
ACAAAAGCCATCTGGTAAAATCACAGAACATTTTGGGAAGCAGAAAAGGC
CATTTAATGTACAACAAAGAAAGATGGAGATGAGGCAGGGGAGACGGAGA
GGGCCGCATCAGGAGCTCCTTTAGTTCCTTTGTTTAGCAGTTACATTACG
TAGTGTTATATGCACAAAATGTAATTTACCCAAAGTCCTATTTAGTAAGC
AGACTTCTCAATCCCAGATGGGTGGTTTTCTAAAATAGATATGTGATATA
TTTGTTTCTCTCCCACTCAGTGCCCACAATAAACATGTCTGGTTAAACTA
GAGACACTCGCTGCAAAACTTGAATTTAGTTTCTAAACTTTTATCAAACT
GAACTCTTGGAATCCCTTTTGCTGTTGTTCAAAGTCGGTGACTGAGTCTG
CTACTTTTAAGTCCATGTCACCCATAGAGACCCTTGTAAAACATTGCTCA
ATTCTATTGGTAATAAACTGCTTCTCCAATGTAAAATAAATAAATAAACT
AACAGAAGAATAAGAAAGAAAAGAAATCAGTGAAATTAGTCACCCAAAAT
CCAAATTAAATGGCCAGCAAAAAGGGGTTAAATTGTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_d03.b1 MSMg01no423_d03.b1 CHROMAT_FILE:
MSMg01no423_d03.b1 PHD_FILE: MSMg01no423_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:49 2005
         (496 letters)



>mm_chr6_101201772_101202667
          Length = 896

 Score =  890 bits (460), Expect = 0.0
 Identities = 487/496 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatggtttgtgttcaaacagcaaatggaatttttccatctaatctgtctgtctccagat 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 ggatggtttgtgttcaaacagcaaatggaatctttccatctaatctgtctgtctccagat 260

                                                                       
Query: 61  cccttcctccaaaagaaaaccacacaatgcagtgaaagaggcatcatgctgattctgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttcctccaaaagaaaaccacacaatgcagtgaaagaggcatcatgctgattctgaga 320

                                                                       
Query: 121 actggggtcaccatttctcctcctagagttcgtcctcttctgggcttgaaacagtgccca 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 actggggtcaccatttctcctcctagagttcatcctcttctgggcttgaaacagtgccca 380

                                                                       
Query: 181 ttcgactcagcagctcccagggacttgccaaatttcagaattgtcttgaaaccaacaata 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ttcgactcagcagctcccagggacttgccaaacttcagaattgtcttgaaaccaacaata 440

                                                                       
Query: 241 ggcagaatatgaaacaggaacattcagatttttagtcttctcttgcagacacaaaagcgc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcagaatacgaaacaggaacattcagatttttagtcttctcttgcagacacaaaagcgc 500

                                                                       
Query: 301 aagggccgtctgctcagccacgcagcagctagctgtgagcctcggcttatgtcacgggag 360
           |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagggctgtctgctcagccactcagcagctagctgtgagcctcggcttatgtcacgggag 560

                                                                       
Query: 361 cagcagtgttcctcacactgtcatacttcccacgacacccacactcgggactggtctctg 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 cagcagtgttcctcacactgtcattcttcccacgacacccacactcgggactggtctctg 620

                                                                       
Query: 421 tgatttttaagaggcactgaagtgtatgactttggttctgcacctgccctggaaaatgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgatttttaagaggcactgaagtgtatgactttggttctgcacctgccctggaaaatgta 680

                           
Query: 481 tgattgccagattatc 496
            ||||| |||||||||
Sbjct: 681 ggattggcagattatc 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no423_d03.g1 MSMg01no423_d03.g1 CHROMAT_FILE:
MSMg01no423_d03.g1 PHD_FILE: MSMg01no423_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:49 2005
         (577 letters)



>mm_chr6_101367905_101368881
          Length = 977

 Score = 1100 bits (569), Expect = 0.0
 Identities = 575/577 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagggagtgtgaggcaattacaagtggtagatagtaccaagggtgctgtaaagatggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 atagggagtgtgaggcaattacaagtggtagatagtaccaagggtgctgtaaagatggcc 718

                                                                       
Query: 61  caaatttgaaggggtatccacagcaaacaaaagccatctggtaaaatcacagaacatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 caaatttgaaggggtatccacagcaaacaaaagccatctggtaaaatcacagaacatttt 658

                                                                       
Query: 121 gggaagcagaaaaggccatttaatgtacaacaaagaaagatggagatgaggcaggggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gggaagcagaaaaggccatttaatgtacaacaaagaaagatggagatgaggcaggggaga 598

                                                                       
Query: 181 cggagagggccgcatcaggagctcctttagttcctttgtttagcagttacattacgtagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cggagagggccgcatcaggagctcctttagttcctttgtttagcagttacattacgtagt 538

                                                                       
Query: 241 gttatatgcacaaaatgtaatttacccaaagtcctatttagtaagcagacttctcaatcc 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gttagatgcacaaaatgtaatttacccaaagtcctatttagtaagcagacttctcaatcc 478

                                                                       
Query: 301 cagatgggtggttttctaaaatagatatgtgatatatttgtttctctcccactcagtgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cagatgggtggttttctaaaatagatatgtgatatatttgtttctctcccactcagtgcc 418

                                                                       
Query: 361 cacaataaacatgtctggttaaactagagacactcgctgcaaaacttgaatttagtttct 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cacaataaacatgcctggttaaactagagacactcgctgcaaaacttgaatttagtttct 358

                                                                       
Query: 421 aaacttttatcaaactgaactcttggaatcccttttgctgttgttcaaagtcggtgactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aaacttttatcaaactgaactcttggaatcccttttgctgttgttcaaagtcggtgactg 298

                                                                       
Query: 481 agtctgctacttttaagtccatgtcacccatagagacccttgtaaaacattgctcaattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agtctgctacttttaagtccatgtcacccatagagacccttgtaaaacattgctcaattc 238

                                                
Query: 541 tattggtaataaactgcttctccaatgtaaaataaat 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tattggtaataaactgcttctccaatgtaaaataaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)