BAC Information

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BAC

Clone NameMSMg01-423I10
Chromosome6 (Build37)
Map Location 47,177,826 - 47,177,952
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
Downstream geneA930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423I10.T7 (MSMg01no423_i10.b1)MSMg01-423I10.TJ (MSMg01no423_i10.g1)
ACCAG517661AG517662
length764783
length of high quality
(start - end)
233 (62 - 294)129 (112 - 240)
definitionCHROMAT_FILE: MSMg01no423_i10.b1 PHD_FILE: MSMg01no423_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:14 2005CHROMAT_FILE: MSMg01no423_i10.g1 PHD_FILE: MSMg01no423_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:14 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGTCGCAATACGACTCACTTTCAAAAGAGGATCCGCGGAATTCTCCCTTG
TCCTAAAGTAATAGACAGTTGCTAATTCCACATTGGTGCTGGAATTGAAA
GGTGAAAGAGCTATAGCTTAATAGGTATGATGGGACATTGTTTTTTATTC
TTTGCTTATGAATTGTGCCAAATATTTAAGGAAGAAATAATGTCCACTCT
ATCCCGAAGGTCTCTAGAAAATAAAAATTAAAGAGCATACTCTTCTTTGA
GAGCATTAGCACTCTCTGAAATCAGCAAATACTCTGATACCCATAGCAGA
TGGATATTTTATAAAAGAAAACTGTAGGACCACATGGAAGATTTATTATG
AAAATAACTCTCAGATGAAGTAAGACATTTATAGTCAAGAAATAGTAAGA
GAGCTTAGAAAGAAGTCTTGTACTAACCTCAGTTGACAACAGAGTCTCTG
TCAATCACTGTCGTATGAAGCCCATGATATGTTTTCACGCTCTAACTGGG
AAGGATGTTGGTCCTTTTATGTTTTTTTAAAGGCGTTTTTGATTACAGTA
AATCTATTAATTCATTATCTCTCTTTTCTCTTTTTTATTACTACTTCTCC
CCTCCTCTCACCCCTTTTTCATTTATTATATATCCCCTATTCCTTTCCCT
CCTCTTTCCCTATCCCCCCTTTATTTTATTCCCCACCCCACCCCTTTTTT
TTCTACTTTTTTATCTCCCCTTTTATCTCCCCCTTTTCTCTCTTTTACCC
CTTTTTTTTCTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
ATCAAAAACAATTCAGTGTGTATGTCTTTAATGAGGATGTAAGGATTTCA
GAAGTATAAAACTAAGTAGGTGCAGACAATACCCACACAGCCTATTATAA
TGATTTTATGGGACATTCTAGAGAAAACCATTGTCTGCTTTCCTAGACGC
TACAAAATCCATCCAACACAAACAAAAGATTGTTCCAGTTTTAATATTAG
AGGCAGGAACACTGACAACTCTAAGAATAGGCAATGTCTGTGCTAGCAAA
CAATTTTGTAGATTTTCCAGAGGATACTTGTCAGATTAATTTCATTTTTG
TTAGGAAACCAGGAGTCTTAGTATCTTTATAGACACCAATGGATATGTTA
TTAAAACTTCATCAAGAAAAGACAATTCTCAAACTAACTACAATTAAGAA
CAGTTATCTCTACCCAAATGGATGCCTGAGGCTAGGGTATTTAATGAGAT
TGTATCTGCTTTATAATGGAGAAACTCATTTATCTGGAATAGTTCCGCCC
CCCTCTGGCACCCCCTGTATTCTTTCTTTATTCTCGCGCCACCCATTTGA
TTTTTTACTCCACATTCCTTTGTTTTCTCGCCCTCTTTAATTTGTTACAG
AATTTGTTTTTTTTTTCTACATACACTTCACTAGCTATCGCTATCCCTTC
TTTACACCTTACACACCCAATTGTTTCCCCCCCACTTTTATTGCCCTCCT
TCGTTTCTTCCCCTTTTTCATTCTCCCTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_i10.g1 MSMg01no423_i10.g1 CHROMAT_FILE:
MSMg01no423_i10.g1 PHD_FILE: MSMg01no423_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:14 2005
         (129 letters)



>mm_chr6_47177626_47178154
          Length = 529

 Score =  238 bits (123), Expect = 1e-67
 Identities = 126/127 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaagtaggtgcagacaatacccacacagcctattataatgattttatgggacattctag 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagtaggcgcagacaatacccacacagcctattataatgattttatgggacattctag 260

                                                                       
Query: 61  agaaaaccattgtctgctttcctagacgctacaaaatccatccaacacaaacaaaagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaaccattgtctgctttcctagacgctacaaaatccatccaacacaaacaaaagatt 320

                  
Query: 121 gttccag 127
           |||||||
Sbjct: 321 gttccag 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)