BAC Information

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BAC

Clone NameMSMg01-423I13
Chromosome6 (Build37)
Map Location 141,513,816 - 141,514,282
singlet/doubletsinglet
Overlap geneSlco1c1
Upstream genePlekha5, Aebp2, EG664868, LOC664875, Pde3a
Downstream geneSlco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423I13.T7 (MSMg01no423_i13.b1)MSMg01-423I13.TJ (MSMg01no423_i13.g1)
ACCAG517667AG517668
length735754
length of high quality
(start - end)
468 (68 - 535)111 (122 - 232)
definitionCHROMAT_FILE: MSMg01no423_i13.b1 PHD_FILE: MSMg01no423_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:14 2005CHROMAT_FILE: MSMg01no423_i13.g1 PHD_FILE: MSMg01no423_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTATACGACTCACAATCAAAAGAGGATCCGCGGAATTCAAGGCT
ACCAAGACCTACAGAGTGATTTCAGTATAGCTAAGTCTACACAGAGAAAA
ATTGTTTCAAGGAAGAAAATCCACTAATGTTTTATAAATAGTCAGTATAT
AATTGATTTAAGATAGAATCATTTACAGTCATTTCAGCTTCAGGTAAAAC
ATATACCAGAAATGGAATAATGACTTCTCATCATCTCATAGGTCACTTAT
TAGTGAGAAATGACCTTTATTGTGGAGATGGCTATGACCCTCGATTTTAC
CAATAGATCATTGTCCAGGGATGGTCTACACTAAAGTCAGGTCTGCCTGA
CAGAATGGGCAAACTGACACAGTTCACTTGTACAGTTTATTACCTGCTTA
TCAAAAGCAATCAGGTAAATGAAAAAGAAGGACCATTCATAACATGATCA
CACTTTGCCTAACTAGAATAAGGAAGGATTGTTAAATGCTGGAAAGGGCA
GCTAGCTGTTAAATACGAGGGCTTATTTCCTTCAAGAATAGAAAAATGAC
TGATGTCTTTCTTTTTACCATGAAGTTTTACTTGAATGAGGGCTAACATA
CTGGTGATCTTTTTTGCTAATCTATGGAACCAGTCTTCCTTTATTTACTG
CATAAAGCTGACCCTCGCTTGCGGACCTGTCTCTTGGCCCCTCAGGTAAC
GAAACCATTCCTTACGATTCAGGTTTGCTCCACCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTG
ACACGAGAAATTCAGGACCCTGTATCTCTCTGTGAGAGGTAAAGGTCTCC
ACGAATTTCAGTCTTCAGTGGGCTATGTTCATATTTGGAATGTTTTCTGA
AGACAGAGAGCTCAGTTGTTAAAATACTTGCCACACAGGACCTGGGCTCA
ATCCCCAGAACCCACATACAAAAGCCAAGTGTGGAATTACATGTTTATAA
TTTTGGTGCTGGAGAACTGAAGCCGTGGGACCCTGGAGCTGGCTGATTAT
ACTTTTTTTTTCTATCTGGCGAGTTTCAGGTCAGTGAGAGAAGCCATCTA
ATATACAAAAATGCTGGATGATAACTAAAGAACAACATTCGAAGCTAATC
TCTGTCTTTAAACATCACCATGTACTTATCGACACCCCCCCCACACATAC
ACATATTATACCTTTCTACAAGTTTTGACAGATACTCCCATTTCTTTCTT
TTTTTCCCCCTTTGTTAATTTTTCTGACACCTTAAGAGGTAAAGACTATT
TTTGTTCCGCGATATTCTAACCGGCCCTTGTTTCGACTTTTCCTACAGAT
TCTAACTTTACTATTACCTTGACACTACCCCATCTCGATACCGCTCCCTC
TACTGCGCATTTGCGCTGTTCCCTTTTAGCTTATCTCTTTTCTCCTTTTG
CCTTCCGTTTTTGCTACTAACGCTAATCCTTTTCCCTTCTCCCCTTTTCT
ATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_i13.b1 MSMg01no423_i13.b1 CHROMAT_FILE:
MSMg01no423_i13.b1 PHD_FILE: MSMg01no423_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:14 2005
         (468 letters)



>mm_chr6_141513616_141514482
          Length = 867

 Score =  835 bits (432), Expect = 0.0
 Identities = 459/468 (98%), Gaps = 1/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatttcagtatagctaagtctacacagagaaaaattgtttcaaggaagaaaatccactaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gatttcagtatagctaagtctacacagagaaaaattgtttcaaggaagaaaatccactaa 608

                                                                       
Query: 61  tgttttataaatagtcagtatataattgatttaagatagaatcatttacagtcatttcag 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 607 tgttttataaatagtcagtatataattgatttaatatagaatcatttacagtcatttcag 548

                                                                       
Query: 121 cttcaggtaaaacatataccagaaatggaataatgacttctcatcatctcataggtcact 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 547 cttcaggtaaaacatataccagaaatggaataatgacttcacatcatctcacaggtcact 488

                                                                       
Query: 181 tattagtgagaaatgacctttattgtggagatggctatgaccctcgattttaccaataga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 487 tattagtgagaaatgacctttattgtggagatggctatgaccctcgattttaccaagaga 428

                                                                       
Query: 241 tcattgtccagggatggtctacactaaagtcaggtctgcctgacagaatgggcaaactga 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ccattgtccagggatggtctacactaaagtcaggtctgcctgacagaatgggcaaactga 368

                                                                       
Query: 301 cacagttcacttgtacagtttattacctgcttatcaaaagcaatcaggtaaatgaaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cacagttcacttgtacagtttattacctgcttatcaaaagcaatcaggtaaatgaaaaag 308

                                                                       
Query: 361 aaggaccattcataacatgatcacactttgcctaactagaataaggaaggattgttaaat 420
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 307 aaggaccattcataagatgatcacactt-gcctaactagaataaggaaggattgttaaat 249

                                                           
Query: 421 gctggaaagggcagctagctgttaaatacgagggcttatttccttcaa 468
           ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 248 gctggaaagggtagctagctgttaaatacaagggcttatttccttcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 867
Length adjustment: 10
Effective length of query: 458
Effective length of database: 857
Effective search space:   392506
Effective search space used:   392506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)