Query= MSMg01no423_p09.b1 MSMg01no423_p09.b1 CHROMAT_FILE:
MSMg01no423_p09.b1 PHD_FILE: MSMg01no423_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:46 2005
(536 letters)
>mm_chr6_38743041_38743975
Length = 935
Score = 998 bits (516), Expect = 0.0
Identities = 528/532 (99%), Gaps = 1/532 (0%)
Strand = Plus / Minus
Query: 5 gaattctcctttactcggacagtatttttaagtttgctgactgaatgttggttgggtggg 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gaattctcctttaat-ggacagtatttttaagtttgctgactgaatgttggttgggtggg 677
Query: 65 aggtgagaagaaggaaaatgatttacacaggaacttatctctggtgttaaaaatagtcga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aggtgagaagaaggaaaatgatttacacaggaacttatctctggtgttaaaaatagtcga 617
Query: 125 gggaatcatatgattgatacacaaatgctgtcctaacacattattttgggaacgatttga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gggaatcatatgattgatacacaaatgctgtcctaacacattattttgggaacgatttga 557
Query: 185 tgctaacatgagatgtggatgaagactagaagcagctagtcctctgacactcccctggga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgctaacatgagatgtggatgaagactagaagcagctagtcctctgacactcccctggga 497
Query: 245 tcatgcccctcatgcagctcttggaagaataccagacagcagccaccagcttcgaccttc 304
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 496 tcatgcccctcatgcagctcttggaagaacaccagacagcagccaccagcttcgaccttc 437
Query: 305 tagccttgaccttatccccagaccccaaaggtgaggaggtgagaggccaattttttgaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tagccttgaccttatccccagaccccaaaggtgaggaggtgagaggccaattttttgaga 377
Query: 365 ccttcccctctctcttttagtctggctgctctcaattgtttctgctattaaaggccaaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ccttcccctctctcttttagtctggctgctctcaattgtttctgctattaaaggccaaga 317
Query: 425 tatcatttgctagtagtctcccccagcacaggagaggcctaaaactgataatagtagaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tatcatttgctagtagtctcccccagcacaggagaggcctaaaactgataatagtagaaa 257
Query: 485 aagtatgaggatctagagctttgagggccaagacagtgcaaggagggatcat 536
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 256 aagtatgaggatctggagctttgagggccaagacagtgcaaggagggatcat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space: 486550
Effective search space used: 486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_p09.g1 MSMg01no423_p09.g1 CHROMAT_FILE:
MSMg01no423_p09.g1 PHD_FILE: MSMg01no423_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:46 2005
(244 letters)
>mm_chr6_38555076_38555719
Length = 644
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%)
Strand = Plus / Plus
Query: 1 attcaagttacttttaaaacatcattgtttttaacaaaaaagcaaatgattacttgttat 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcaaattacttttaaaacatcattgtttttaacaaaaaagcaaatgattacttgttat 260
Query: 61 ttcaaatatataacatcaaattattgttatatatgtgagtttagtttttgatggtaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaatatataacatcaaattattgttatatatgtgagtttagtttttgatggtaaaaa 320
Query: 121 aagtccattaaaagtcttggcagtttgctgttttcttgcccatgctgtgaagtacttata 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 aagtccattaaaagtcttggcagtttgctgttttcttgcccttgctgtgaagtacttata 380
Query: 181 tctctgttactacaagtaggttgtctatatgaaccttgtcttggcaacagttcccatagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctgttactacaagtaggttgtctatatgaaccttgtcttggcaacagttcccatagg 440
Query: 241 tcag 244
||||
Sbjct: 441 tcag 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
