BAC Information

Click to search

BAC

Clone NameMSMg01-424B11
Chromosome6 (Build37)
Map Location 15,485,666 - 15,666,218
singlet/doubletdoublet
Overlap genenone
Upstream genePpp1r3a, Foxp2, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424B11.T7 (MSMg01no424_b11.b1)MSMg01-424B11.TJ (MSMg01no424_b11.g1)
ACCAG518093AG518094
length743746
length of high quality
(start - end)		606 (48 - 653)471 (77 - 547)
definitionCHROMAT_FILE: MSMg01no424_b11.b1 PHD_FILE: MSMg01no424_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:57 2005CHROMAT_FILE: MSMg01no424_b11.g1 PHD_FILE: MSMg01no424_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,485,666 - 15,486,267)(15,665,748 - 15,666,218)
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCTTTTTTAATAGCTGAGTAGTATTACATTGTGTAAATGCAC
CACATTTTCTGTATACATTCCTCTGTTCAAGGACATCTGGATTGTTTTCA
GTTTCTAGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATATGC
CCTTATTACATGTTGGAGCATATTCTGGGTATATGTCCAGGAGTGGTATA
GTTGTGTCCTCAGGTAGTACTATGTCCAGTTTCCTGAGAAACTGCCATAC
TGATTTCCTTAGTGGTTGTACCAGCTTGCAATCCCACCATCTGGAATGAT
GAGAAAATTGTATAAATGGTTGTTGCACAGCATTGTGGGTGTACTTAATG
CAACAGAGATAGACACTTAGCAGGATGGATTTTATGTCCTCTATGTATAT
GTTACTGGATTAAAGCTGTGCACATAACAAACTTCATTCTATAATAATAG
AAGTAAAAACAAAGTTAGATAAGACTTGCAGATGCATACATGATGGTCAA
AAACCTGGCCCCTTGTGGTCAGAAGGATGGGGATACCATAGGTGAATCTC
AACACAGCACTTATTGGCAGGCACTAAATACAGAGGAATCTACAGAGCAT
GTGGCTGGCAGTTGCATTTAATAAGAGTCCCAAGTGAAATATCCAAAGGA
ATTCCTTCCATATGACTTATTTAAGAAATTACTTGGGCCGGGG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTGGGAATAATCCACAAAGTC
TCAGAGAAAGAGAAGGATACTTTGAATATGGTTTGATATATGAGTTTGAC
TGTAGAAGTACCCATTTTACTTATTGTCTAAAAGAGCCATAGACATAGAT
GTATATCTTTCTGTTGTCTCTTTTGCTCATAGCACCAAAATCTCAACCAA
GAAGGACTTTATAGGTTTAGTTTAAAACAAAGAGGCCAGAGCCAGAAACT
TCTATTTAGAGTTTATTTATGAGTCTCAATAATAGTAGATGGACAGACAT
GGGTATCGATTGTCCTTATAAAGGACAATATTTATTTGGGGCTGGCTTAC
AGGTTCAAAGGTTCAGTCCATTATCATCAAGGTGGGTACATGGCAGCATC
CAGGCAGACATGATGCAGGAGGAGTTGAGAGCTTCTCATCTTCATCTGAA
GGCTGCTAGTAGAATACTACAGGCTTCCAGGCAGCTAGGATAAGTGTAGC
GGCCACCAGCCTCAGCCTTGAGTAGGCTGGCTTTGACCTTGCTGCCACTG
AGTGTGATACCACCTGGTGTGGAGCCTTCCTCCTTAAATGTCTCTAATGT
TCTGACTCCTGTTGAAAGGCCCTTGAGATTATCCATAGACTGTTTCCTAT
TGATCTCCCTTTGGCTGGTCCCCGTTTTTTATAATGTTTTGGCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_b11.b1 MSMg01no424_b11.b1 CHROMAT_FILE:
MSMg01no424_b11.b1 PHD_FILE: MSMg01no424_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:57 2005
         (606 letters)



>mm_chr6_15485462_15486467
          Length = 1006

 Score = 1133 bits (586), Expect = 0.0
 Identities = 598/602 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcttttttaatagctgagtagtattacattgtgtaaatgcaccacattttctg 64
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcatcttttttaatagctgagtagtattacattgtgtaaatacaccacattttctg 264

                                                                       
Query: 65  tatacattcctctgttcaaggacatctggattgttttcagtttctagctattataaataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatacattcctctgttcaaggacatctggattgttttcagtttctagctattataaataa 324

                                                                       
Query: 125 ggctgctatgaacatagtggagcatatgcccttattacatgttggagcatattctgggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggctgctatgaacatagtggagcatatgcccttattacatgttggagcatattctgggta 384

                                                                       
Query: 185 tatgtccaggagtggtatagttgtgtcctcaggtagtactatgtccagtttcctgagaaa 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatgtccaggagtggtatagctgtgtcctcaggtagtactatgtccagtttcctgagaaa 444

                                                                       
Query: 245 ctgccatactgatttccttagtggttgtaccagcttgcaatcccaccatctggaatgatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgccatactgatttccttagtggttgtaccagcttgcaatcccaccatctggaatgatg 504

                                                                       
Query: 305 agaaaattgtataaatggttgttgcacagcattgtgggtgtacttaatgcaacagagata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaaaattgtataaatggttgttgcacagcattgtgggtgtacttaatgcaacagagata 564

                                                                       
Query: 365 gacacttagcaggatggattttatgtcctctatgtatatgttactggattaaagctgtgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacacttagcaggatggattttatgtcctctatgtatatgttactggattaaagctgtgc 624

                                                                       
Query: 425 acataacaaacttcattctataataatagaagtaaaaacaaagttagataagacttgcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acataacaaacttcattctataataatagaagtaaaaacaaagttagataagacttgcag 684

                                                                       
Query: 485 atgcatacatgatggtcaaaaacctggccccttgtggtcagaaggatggggataccatag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgcatacatgatggtcaaaaacctggccccttgtggtcagaaggatggggataccatag 744

                                                                       
Query: 545 gtgaatctcaacacagcacttattggcaggcactaaatacagaggaatctacagagcatg 604
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 745 gtgaatctcaacacagcacttactggcaggcactaaatacagaggaatccacagagcatg 804

             
Query: 605 tg 606
           ||
Sbjct: 805 tg 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no424_b11.g1 MSMg01no424_b11.g1 CHROMAT_FILE:
MSMg01no424_b11.g1 PHD_FILE: MSMg01no424_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:57 2005
         (471 letters)



>mm_chr6_15665731_15666601
          Length = 871

 Score =  888 bits (459), Expect = 0.0
 Identities = 468/471 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtgggaataatccacaaagtctcagagaaagagaaggatactttgaatatggtttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tctgtgggaataatccacaaagtctcagagaaagagaaggatactttgaatatggtttga 429

                                                                       
Query: 61  tatatgagtttgactgtagaagtacccattttacttattgtctaaaagagccatagacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tatatgagtttgactgtagaagtacccattttacttattgtctaaaagagccatagacat 369

                                                                       
Query: 121 agatgtatatctttctgttgtctcttttgctcatagcaccaaaatctcaaccaagaagga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 368 agatgtatatctttctgttgtctcttttgctcatagcaccaaaatctcaaacaagaagga 309

                                                                       
Query: 181 ctttataggtttagtttaaaacaaagaggccagagccagaaacttctatttagagtttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctttataggtttagtttaaaacaaagaggccagagccagaaacttctatttagagtttat 249

                                                                       
Query: 241 ttatgagtctcaataatagtagatggacagacatgggtatcgattgtccttataaaggac 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 248 ttatgagtctcaataatagtagatggatagacatgggtatcgattgtccttataaaggac 189

                                                                       
Query: 301 aatatttatttggggctggcttacaggttcaaaggttcagtccattatcatcaaggtggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aatatttatttggggctggcttacaggttcaaaggttcagtccattatcatcaaggtggg 129

                                                                       
Query: 361 tacatggcagcatccaggcagacatgatgcaggaggagttgagagcttctcatcttcatc 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 128 tacatggcagcatccaggcagacatgatgcagaaggagttgagagcttctcatcttcatc 69

                                                              
Query: 421 tgaaggctgctagtagaatactacaggcttccaggcagctaggataagtgt 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  tgaaggctgctagtagaatactacaggcttccaggcagctaggataagtgt 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |