BAC Information

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BAC

Clone NameMSMg01-424D19
Chromosome6 (Build37)
Map Location 49,420,781 - 49,421,313
singlet/doubletsinglet
Overlap genenone
Upstream geneSspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31
Downstream geneLOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424D19.T7 (MSMg01no424_d19.b1)MSMg01-424D19.TJ (MSMg01no424_d19.g1)
ACCAG518205AG518206
length747766
length of high quality
(start - end)
567 (64 - 630)249 (70 - 318)
definitionCHROMAT_FILE: MSMg01no424_d19.b1 PHD_FILE: MSMg01no424_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:08 2005CHROMAT_FILE: MSMg01no424_d19.g1 PHD_FILE: MSMg01no424_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGTTCCCACAAGAAAAGATGTGGGCCTGGGCCTATCCCTAACCCT
GAAGAGGCCTAACTCCAAAGGAGAGATGTGGACCTGGGCCTATTACCAAC
CCACAAAGTGGCCTGGGCCCAAAGGAGAATATATGTGGGCCAGGGACCAT
CCCTGAACATGAAGAAGCATGGGTCCAAAGCAAGAAGCGTTGTGGGTCTG
GGCCTTTTCCTATCTCTGAAGAGGCCTGGGCCCACAGAAGATGACATGTG
GACCTGAACTTATCCATATCCCTTGAAGTGTCCTGGACCCAAAAAGAAAA
TATGTGGGCCTAGGCTAATTCATAAGAAGAGATGTGAGCCTGGGACTCTC
CCTAACCTGATGAGGTGTCTGGAGCTAAAAAAGAAGAGATCTGGGCCTGG
GCCTATCCCTAAACCTCAAGATGCTCAAGCACAAATTGCAAAGTCGTTTG
GGCCTGGGCCCATACTGCTGCTGAAGAGGCCATGTCCAAAAACAGAAAAA
ACATGGGTCTCAGCCATTCCCACAATGAAAGGAGCCCAAGCCAAACCATA
AAAAAAGAAGAAATGGGGTCTGTCCCAGAAGCTGTGGCGCTTCTGTAGTC
CGCACTCTCACCTGCGCAGATAGTACCCCCCAGAGCTCGTGTCTCTAGCT
GCTTATGTACCAGAAGATGGCCTAGTTGGACATCACTGGGAAAGAAG
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCAGGAATTCTTTGGCACTGCTGGCTCCTGCAGGCTCTG
GATACTTGGGTTTGCAACCTTAGCTGCCCTGTTGTACCCCCTAACCAAGG
AAGGGGAGGTGTTTGTATGGATCCCAGAAAGACTTTAAAGAAATTAAAAA
GACCCTACTAATGGCCCCAGCCTTGGCCTTGGCTGACCTAATGAGAGAGC
AGGGGCTGTCAGAGGAGTCCTTACTTAAACTTTGGGACCTTGGAAAAGAC
CAGTGGCTTACCTATCCTTTTTTTTAGATCCTGTTGCCAGCGGGTGGTTT
TCTTGCCTGAAAGCTATTGCTGCCATAGCTCTACTTGTCAAGGATGCAGA
TAAGTTCACTATGGGACAGCAAAATGATCTGAAGGATCAGCCTTAGCCTG
GGAGTCTGAGCTGGTACACAGATGGCAGCAACTTCATGTTTGAAAGTAAG
CGTAAGGTGTGGTGCACCAGTGTTGTATATATAGCCAGTGTTCTGTTCCT
TTCGTCTCCTTGATATTATTATGCCCTTTTATTCCTATCTTGTGGTTTTG
ATACCAGTTCTTATAATGTTCATTGTTAATTCTATCATTTTTTTTATTTG
TTGATTTTTACGCTTCTTCCTCCGTGCCTGTAATCTCTATTCTCATTCTC
GCTTGTCCACTTTTCGCTTTACACTTGTTCTCTACTCCCCTTTTTTTTCT
CTCCTTTTTTTCACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_d19.b1 MSMg01no424_d19.b1 CHROMAT_FILE:
MSMg01no424_d19.b1 PHD_FILE: MSMg01no424_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:08 2005
         (567 letters)



>mm_chr6_49420547_49421513
          Length = 967

 Score = 1009 bits (522), Expect = 0.0
 Identities = 531/534 (99%), Gaps = 2/534 (0%)
 Strand = Plus / Minus

                                                                       
Query: 35  cctgaagaggcctaactccaaaggagagatgtggacctgggcctattaccaacccacaaa 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 cctgaagaggcctaactccaaaggagagatgtggacctgggcctattaccaacccacaaa 708

                                                                       
Query: 95  gtggcctgggcccaaaggagaatatatgtgggccagggaccatccctgaacatgaagaag 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gtggcctgggcccaaaggagaatatatgtgggccagggaccatccctgaacatgaagaag 648

                                                                       
Query: 155 catgggtccaaagcaagaagcgttgtgggtctgggccttttcctatctctgaagaggcct 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 catgggtccaaagcaagaagcgttgtgggtctgggccttttcctatctctgaagaggcct 588

                                                                       
Query: 215 gggcccacagaagatgacatgtggacctgaacttatccatatcccttgaagtgtcctgga 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gggcccacagaagatgacatgtggacctgaacttatccatatcccttgaagtgtcctgga 528

                                                                       
Query: 275 cccaaaaagaaaatatgtgggcctaggctaattcataagaagagatgtgagcctgggact 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cccaaaaagaaaatatgtgggcctaggctaattcataagaagagatgtgagcctgggact 468

                                                                       
Query: 335 ctccctaacctgatgaggtgtctggagctaaaaaagaagagatctgggcctgggcctatc 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctccctaacctgatgaggtgtctggagctaaaaaagaagagatctgggcctgggcctatc 408

                                                                       
Query: 395 cctaaacctcaagatgctcaagcacaaattgcaaagtcgtttgggcctgggcccatactg 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cctaaacctcaagatgctcaagcacaaattgcaaagtcgtttgggcctgggcccatactg 348

                                                                       
Query: 455 ctgctgaagaggccatgtccaaaaacagaaaaaacatgggtctcagccattcccac-aat 513
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 347 ctgctgaagaggccatgtccaaaaacagaaaaaacatgggtctcagccattcccacaaat 288

                                                                 
Query: 514 gaaaggagcccaagccaaaccataaaaaaagaagaaatggggtctgtcccagaa 567
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 287 gaaaggagcccaagccaaaccat-aaaaaagaagaaacggggtctgtcccagaa 235


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)