BAC Information

Click to search

BAC

Clone NameMSMg01-424N04
Chromosome6 (Build37)
Map Location 19,084,113 - 19,084,694
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424N04.T7 (MSMg01no424_n04.b1)MSMg01-424N04.TJ (MSMg01no424_n04.g1)
ACCAG518652AG518653
length753760
length of high quality
(start - end)		587 (43 - 629)560 (80 - 639)
definitionCHROMAT_FILE: MSMg01no424_n04.b1 PHD_FILE: MSMg01no424_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:52 2005CHROMAT_FILE: MSMg01no424_n04.g1 PHD_FILE: MSMg01no424_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTAATATGCCATGACTGTTTCTATACCACAATAAGGTTTTGGGATAT
TTCTAGATGTACTTCATGCAGACACAGCTTCCCAACACACTGCCCTTTCT
TCAAAGAATCACCTGCATCCATTGCCCGAGGAAGCCATCAAAATTAAAGG
CTATATTTCTTCTCTAGGGCATCAAAGTTTTTGATTTTTAAGAGTTCAAA
CTTTTGAATATTAAAAGAAATGCTAGAAACCTTAGAACTAGTGTAATACA
TACTTCATTCGAGAGAATGCTTTTATTATTCAAGCAGGCTTTGGGAGATA
GTAAAAGAAAGATAACCCAAAATTCAGTAGCTTAAACATGGTGTATTTCA
CTTTTATAAGAATATAAAGCCACAGTACAGTCGAACACAAACTTTGTGAT
ATTTGAGTCTTAACTTTTCAGGGTATCTTCAAGTAGAATTTTAATTTGGA
GTTAATAGTCACTCAGTGTGTTCATCTCTGAGAACCCCAAATTATGAGAG
TATTTCTTCAAACTAGATGGCTGGCAATGGGTAGCAGGTGCTCTCATTTG
CAAACTTGTATTTATTCCTTTACTTCTTTGCCTTCGAGCTAAGCTGCAAC
CTAATTTCCCCTATAATTCACAGGGTTTGGGGCACCATTTAAAATTATTC
ATCCAAACTGGATATTCTCCCTCTGNGNGGTTATGTATGCATATGGAACA
AAN

CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAGTTCTTAGGCAAGTGG
ATAGAACTCATCCCGAGTGAAGTAACCCAGTCACAAAAGAACACACATGA
CATGCACACATGATATGGACTCACTGATAAGTGGATATTTGCCCAGAAGC
TCAGAATACCCAAGATATAATCTGCAAAATACAAGAAACTCAAGGATAAG
GAAGACCAAAGTATATGTTCTTTGATCCTCCTTAGAAGGTAGAACAAAAC
ATCCATGAAAGGAGTTACAGACAGTGTGTGGAGAAGAGCTTGAAGGAATG
ACCATCTAAAGACCTGGGTATGTATCCCATAAACCACCACCAAACCCAGA
CACTATAGTGGATGTCTACAAGAGCTTGCTGATGGGAGCCTGATGAAGCT
GTCTCCGGAAAGGCTCTGTCTGTGCCTAACAAATACAGAAGTGGATGCTC
ATAGCCATCCATTGGATGGAGCACAGGGTCCCCAATGAAGGCAACTAGAG
AAAGTACCCAAGGAGCTGAATGGGTTTGCAGCCTTGTAGGAGAAATAACA
ATATGAACTAAACAGTACCCCCAGAGCTTCCTGGGAGTAAACCACCAATC
AAAGAAAACACATGGTGGGACTCTTGGCTCTATCTGCATATGTAGCAGAG
GATGACCTAGTTGGTCATCAATGGGAGGAGAGGCCCCTGTTCCTGTGAAG
GCCCCATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_n04.b1 MSMg01no424_n04.b1 CHROMAT_FILE:
MSMg01no424_n04.b1 PHD_FILE: MSMg01no424_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:52 2005
         (587 letters)



>mm_chr6_19083909_19084894
          Length = 986

 Score = 1096 bits (567), Expect = 0.0
 Identities = 579/583 (99%), Gaps = 1/583 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtaatatgccatgactgtttctataccacaataaggttttgggatatttctag 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gaattcagtaatatgacatgactgtttctataccacaataaggttttgggatatttctag 727

                                                                       
Query: 65  atgtacttcatgcagacacagcttcccaacacactgccctttcttcaaagaatcacctgc 124
           |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 726 atgtgcttcatgcagacacagcttcctaacacactgccctttcttcaaagaatcacctgc 667

                                                                       
Query: 125 atccattgcccgaggaagccatcaaaattaaaggctatatttcttctctagggcatcaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 atccattgcccgaggaagccatcaaaattaaaggctatatttcttctctagggcatcaaa 607

                                                                       
Query: 185 gtttttgatttttaagagttcaaacttttgaatattaaaagaaatgctagaaaccttaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gtttttgatttttaagagttcaaacttttgaatattaaaagaaatgctagaaaccttaga 547

                                                                       
Query: 245 actagtgtaatacatacttcattcgagagaatgcttttattattcaagcaggctttggga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 actagtgtaatacatacttcattcgagagaatgcttttattattcaagcaggctttggga 487

                                                                       
Query: 305 gatagtaaaagaaagataacccaaaattcagtagcttaaacatggtgtatttcactttta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gatagtaaaagaaagataacccaaaattcagtagcttaaacatggtgtatttcactttta 427

                                                                       
Query: 365 taagaatataaagccacagtacagtcgaacacaaactttgtgatatttgagtcttaactt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 taagaatataaagccacagtacagtcgaacacaaactttgtgatatttgagtcttaactt 367

                                                                       
Query: 425 ttcagggtatcttcaagtagaattttaatttggagttaatagtcactcagtgtgttcatc 484
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 366 ttcagggtatcttcaagtagaattttaatttggag-taatagtcactcagtgtgttcatc 308

                                                                       
Query: 485 tctgagaaccccaaattatgagagtatttcttcaaactagatggctggcaatgggtagca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tctgagaaccccaaattatgagagtatttcttcaaactagatggctggcaatgggtagca 248

                                                      
Query: 545 ggtgctctcatttgcaaacttgtatttattcctttacttcttt 587
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggtgctctcatttgcaaacttgtatttattcctttacttcttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 986
Length adjustment: 10
Effective length of query: 577
Effective length of database: 976
Effective search space:   563152
Effective search space used:   563152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |