XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
ATACTTACTACAGAGTCTAGAAGGAAGAGAGCAGGTAACCGTACGGGTTA
CCTCCTGAGATTCCTGACCTCTGTGAGACACACAAATTCTGAGCAGCACC
AGTGGGGGTCATGGAAACCGGAGGCAGAGCACAAGACCTTCCTACCGTGG
TCAGAGGTAAGTCCACCATTAACAGTCCCCTGTGCAAGGGATGCTGGTTT
GTGTGTTTGTTTGTTTGTTTGTTTCAGTGTGTGCGCGCGCGTGTGTGTGC
ACGCGCTTTTTTTTTTTTTTTTTTTTTTTTTAAGGAGACAAGGTTTCTCT
TCGTCCTTGGCTGTCCTGGAACTCGATTTGTAGACCAGGCTGGCCTTCAG
TCAAATATGGGCTGACTCTTGTCTCCCCAGTACTGATAGTAAATGCTTGT
ACCATCACTGGAGGGATGCTGTTCTTAAGTGGCAGCTTAGTTAGGACATA
TGGGTCTTGGACTTCCCTCCCCACCAAGGAAAAGGGTTTCCAGCCTTGAA
GAGACTACCTGGAAACTAAGGAAACCTAAGAGGTAGGAGCCCTGCCCGCA
GCTCAGACCTTTGGTTTCCCCCCTTCCTTTGTGGACAGTCTGTGTTTCCT
CACCCTAGCCTGGCAGTCCCACCCTGAGAGGCGCATCTGTGGTGTTGGCT
GGGCTTCTACCCGAAGCTCGCCCTGAGCCAGCATCN

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGAGGCAGAAATCTGTAATGTGTC
TAATGCTTGATTTAAAAGTTGGGTTTCTCAATTGTTAGGAGCTCATACTG
CTTTTGTAGAGGGGACCAGAGTTTGACTCATAGCACCCACAAAACGAGCA
GCACCTGACAAGGTACCAGAGGATCCAATGCCCTCTCTTCTGGCTTCTGT
GAGTACCTGCACTCACACGAACACACAAAATAATTTTTTTTCTTTCTAAT
TTAAAATGTTTAAAATTTAGTTGTGACCCAAAATAAAATAAAAAGGTAAG
AAGCCGATAGTGGTGGAATACACCTTTATTCCCAGCACTCAGGAGGCAAA
GGCAGATGAAGATCTCAAGGGCCAGCCTGGTCTACATACAGAGCTAGAGC
TCCAGGAAACAGAAACTCTGTTCTGGAAAAGCAAACAAATATCAACTGAC
TTAATTTGAATTTCATTTTTAAAAAAGGCCCGATGATAAATTTTGGCTTT
GGATTAAGAAAGACCTGACAATTTCAATGTTCCTAAACATCTTTCTGCCA
CTCTGCACTGTGCACTTGTGAGGCAAATTTCTCAGAAATTTGTTTATATA
ATCAACCTAACATTTCTGAAAAACACCCAAAATGGTTTTTGGTTTCCATA
TCCCATATTATGCTTAAAAAATAAAACTAAGTCTTCCCCCCGGTTTGAAC
AAATTAATTT

Query= MSMg01no425_f09.b1 MSMg01no425_f09.b1 CHROMAT_FILE:
MSMg01no425_f09.b1 PHD_FILE: MSMg01no425_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:31 2005
         (567 letters)



>mm_chr6_100396081_100397048
          Length = 968

 Score =  601 bits (311), Expect = e-176
 Identities = 376/413 (91%), Gaps = 27/413 (6%)
 Strand = Plus / Minus

                                                                       
Query: 41  cctcctgagattcctgacctctgtgagacacacaaattctgagcagcaccagtgggggtc 100
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 387 cctcccgagattcctgacctctgtgagacacacaaattctgagcagcaccagtgggggcc 328

                                                                       
Query: 101 atggaaaccggaggcagagcacaagaccttcctaccgtggtcagaggtaagtccaccatt 160
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atggaaactgaaggcagagcacaagaccttcctaccgtggtcagaggtaagtccaccatt 268

                                                                       
Query: 161 aacagtcccctgtgcaa-gggatgctggtttgtgtgtttgtttgtttgtttgtttcagtg 219
           ||||||||||||||||| ||||||||||||||      |||||||||||||||||||   
Sbjct: 267 aacagtcccctgtgcaaggggatgctggtttg------tgtttgtttgtttgtttca--- 217

                                                                       
Query: 220 tgtgcgcgcgcgtgtgtgtgcacgcgctttttttttttttttttttttttttaaggagac 279
                      ||||||||||||||||      |||||||||||||||||| || |||||
Sbjct: 216 -----------gtgtgtgtgcacgcgc------ttttttttttttttttttaaatgagac 174

                                                                       
Query: 280 aaggtttctcttcgtccttggctgtcctggaactcgatttgtagaccaggctggccttca 339
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 173 aaggtttctcttcgtccctggctgtcctggaactcaatttgtagaccaggctggccttca 114

                                                                       
Query: 340 gtcaaatatgggctgactcttgtctccccagtactgatagtaaatgcttgtaccatcact 399
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 gtcaaagatgggctgactcttgtctccccagtactgatagtaaatgcttgtaccatcact 54

                                                                
Query: 400 ggagggatgctgttcttaagtggcagcttagttaggacatatgggtcttggac 452
           || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  ggcgggatgctgttcttaagtggcagcttagttaggacatatgggtcttggac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space:   533606
Effective search space used:   533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)