BAC Information

Click to search

BAC

Clone NameMSMg01-425I02
Chromosome6 (Build37)
Map Location 30,180,829 - 30,180,991
singlet/doubletsinglet
Overlap geneUbe2h
Upstream gene2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
Downstream geneZc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425I02.T7 (MSMg01no425_i02.b1)MSMg01-425I02.TJ (MSMg01no425_i02.g1)
ACCAG519172AG519173
length772769
length of high quality
(start - end)
164 (66 - 229)355 (72 - 426)
definitionCHROMAT_FILE: MSMg01no425_i02.b1 PHD_FILE: MSMg01no425_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:44 2005CHROMAT_FILE: MSMg01no425_i02.g1 PHD_FILE: MSMg01no425_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGCGGAATT
CCACTTATGGTTCGTATTTTTGCTTTTCAGTATTTTAAGCTTAAAGAAAG
TAATTTTGTTCTTTGAGGGGAAAGACAACAGTAAGGCTGTAGTATCCTAA
GACCTGAGGAACACTAAAAGTCCTGCTAACTGCCAGACCACCAGGTCACC
AGTCTGACCTAAGAACCATTGTATCACATNTGGNCGTGGNCAAGNTTAAT
TACNTTATATTNNNNNNNNNNNNNNNNTNTNNNTTTTTTTNTGNTTNNNT
NNTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNNTTNTNTTTTTTTTTTCATCATTTTTTTTTCTTTTTTCTTCCCCTCTT
CCTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTCTTCCTCCTCTCTTCTCT
CTTCTCCTTCCTCCCTCCTTTTCTTTCTTCTCCTCCCTTCTTTTTTTTTC
CCCCTTTTTTTCTTCTCCCTCCTCCTTTCCCTCCCTCTTTCCTTCTCCCC
TTCCCTCTTTTTTTCCCCCTTTCCCTCCTCTTTCCCTTTTCCTTTTTCCC
CTTTTTCTCTCTTTCTCTTTTTCTCTCTTTCTCCCCCCTTCCATCTTTTT
TTCCTTCTTTCACCCCCTTCTTTCTATTTCTTCCTTTTCTTTTCTTTTCT
CACCCTCTTATATTCCCCCTTTTCCACTTCCCACTTTCCCTTTCCTTCTC
CACCCTTACTTTCCATCCTTTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGAGGTAGAGGAAGGAGGATCTGTTTAA
GATCATCCTTGCCATACAGTAAATTGGAGACCATTCTGTGTTAATGAAAG
AAATGAAACAAATTTCGAGCCTGATGCAGACTAGGTAGGAAAACCTGCCA
ATCAAAAGAAGCCAGACATGATTTTTTTTTTTTTTTCTGAGACAGGGTCT
CACTCTGACTAACCCTGGCTGGCCTGGAATTAAGAGAGGTCTGCCTACCT
TTGCCTCCTGAGCGCTAGCATTAAAGGTGTGAGTGAATACAGGTAGCCCC
ACAAAGGTCAATGTGTATGACTGTGATTCCATTTATTTGAAGGAAGGAGG
AAGGAAGGGAGAGGCAGAGAGAGACAGATAGGGACTTAATACCCTCTTCT
TTTCTCTACTCCTGTCCTTCCACTTTATCCCTCTTTTCTCTCTTCTCCCT
TATTTTCCTCCCTCCTTCTCCCCCATTTTTTCTTCTCTTATTCTTCCTAA
TTTTCCCCATGTCCTTCTTTTTTCTCCTCTTTTTTCTTTTTTTCCCCTCT
TCCTCACCATTTTATCCTATTTTTCTTTTTTTTCAATCTATTTTTTTATC
TTCCTTCACTTCCCTTTTTTCCTTCTTGCTGAATTCCCCTCATCCCTTAT
CTTTCTTTTCTTTTTCCCCTTCCCCCATTTTTCTTATTTCTCTTCTCCTC
CTTCCCTCCATCATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_i02.b1 MSMg01no425_i02.b1 CHROMAT_FILE:
MSMg01no425_i02.b1 PHD_FILE: MSMg01no425_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:44 2005
         (164 letters)



>mm_chr6_30180629_30181191
          Length = 563

 Score =  310 bits (160), Expect = 4e-89
 Identities = 163/164 (99%), Gaps = 1/164 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttgcttttcagtattttaagcttaaagaaagtaattttgttctttgaggggaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttgcttttcagtattttaagcttaaagaaagtaattttgttctttgaggggaaaga 260

                                                                       
Query: 61  caacagtaaggctgtagtatcctaagacctgaggaacactaaaagtcctgctaactgcca 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 caacagtaaggctgtagtatcctaagacctgaggaacactaaa-gtcctgctaactgcca 319

                                                       
Query: 121 gaccaccaggtcaccagtctgacctaagaaccattgtatcacat 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaccaccaggtcaccagtctgacctaagaaccattgtatcacat 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 563
Length adjustment: 8
Effective length of query: 156
Effective length of database: 555
Effective search space:    86580
Effective search space used:    86580
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)