Query= MSMg01no425_j07.b1 MSMg01no425_j07.b1 CHROMAT_FILE:
MSMg01no425_j07.b1 PHD_FILE: MSMg01no425_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:50 2005
(511 letters)
>mm_chr6_55933463_55934373
Length = 911
Score = 971 bits (502), Expect = 0.0
Identities = 508/510 (99%), Gaps = 2/510 (0%)
Strand = Plus / Plus
Query: 3 gaattccaagtgcta-ttcatgaaattagcctctctaatcaaagctcttggttttgagta 61
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccaagtgctatttc-tgaaattagcctctctaatcaaagctcttggttttgagta 261
Query: 62 ctgaaacctaaagggggtaaaatttacacaaagaagtatgatatagaagaggccaagttg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctgaaacctaaagggggtaaaatttacacaaagaagtatgatatagaagaggccaagttg 321
Query: 122 ttccctggcaaatgtctaaatgtgaagtctgagtttattcttttgttctttttgatttaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttccctggcaaatgtctaaatgtgaagtctgagtttattcttttgttctttttgatttaa 381
Query: 182 agagaatgacttcagcttcatgtaaaggactatttatgttatccacttcttgaaggtatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agagaatgacttcagcttcatgtaaaggactatttatgttatccacttcttgaaggtatt 441
Query: 242 ggaaaaatgaatgggtttctccatttttatttattttatggtgtgttggtgttttatgtg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggaaaaatgaatgggtttctccatttttatttattttatggtgtgttggtgttttatgtg 501
Query: 302 tctgtgtgagggtgtctgattccctggaactggagttattttatatacagttatgagctg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tctgtgtgagggtgtctgattccctggaactggagttattttatatacagttatgagctg 561
Query: 362 ccatgtgggtgctggaaattgaacctgggtcctctggaggagcaactgattttcctaact 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccatgtgggtgctggaaattgaacctgggtcctctggaggagcaactgattttcctaact 621
Query: 422 actgagtcatctctccagcccggttttctctatttttaactacatgatctaaaattccct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 actgagtcatctctccagcccggttttctctatttttaactacatgatctaaaattccct 681
Query: 482 caagaatcaacttgaacaagatcaaaatat 511
||||||||||||||||||||||||||||||
Sbjct: 682 caagaatcaacttgaacaagatcaaaatat 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_j07.g1 MSMg01no425_j07.g1 CHROMAT_FILE:
MSMg01no425_j07.g1 PHD_FILE: MSMg01no425_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:50 2005
(450 letters)
>mm_chr6_56090587_56091434
Length = 848
Score = 717 bits (371), Expect = 0.0
Identities = 428/451 (94%), Gaps = 11/451 (2%)
Strand = Plus / Minus
Query: 1 tctgtagctccagtatggcaggagcaatgggtagggaatttgatacagaaagagacatta 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 601 tctgtagctccagtatggcaggagcagtgggtagggaatttgatacagaaagagacatta 542
Query: 61 tagagagaatcaggcaaggattttacattgtgccaagaatagcacatccatatatttccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 541 tagagagaatcaggcaaggattttacattgtgccaagaatagcacatccatatattttcc 482
Query: 121 tgtaggaaatgggggcatatccaaagaattctgtgtatcatcaaatactgccatttgaac 180
||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 481 tgtaggaaacgagggcatatccaaagaattctgtgtatcatcaaatactgtcatttgaac 422
Query: 181 tcacaattaaattgtagtgaactgcaaaacaaattttgttaatagtgttagttgatcaga 240
|||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||
Sbjct: 421 tcacaattaaattgtagtgagctgcaaaacaaattttgttaacagtgttaat-gatcaga 363
Query: 241 taaaccgttcttcccttgtgggttacattgcaggatgtttgctatccttctctgctgagt 300
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 362 tgaaccgttcttcccttgtgggttacattgcaggatgtttgctatctttctctgctgagt 303
Query: 301 gtcaccagcatcagtagcattatct-ccttagtaactgtggaaactacatagtcatttct 359
||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||
Sbjct: 302 gtcaccagcatcagtagcattat-tgccttagtaactgtggaaactacataatcatttcc 244
Query: 360 gcatttccagatacccactcagaggagtgggcagtgtcccccttggttggtatttaattt 419
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 243 -catttccagatacccactcagaggagtgggcagtgtccccctt-------atttaattt 192
Query: 420 ccttccttacatgtggctgtgatgagttagt 450
|||||||||||||||||||||||||||||||
Sbjct: 191 ccttccttacatgtggctgtgatgagttagt 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 848
Length adjustment: 10
Effective length of query: 440
Effective length of database: 838
Effective search space: 368720
Effective search space used: 368720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
