Query= MSMg01no425_j17.b1 MSMg01no425_j17.b1 CHROMAT_FILE:
MSMg01no425_j17.b1 PHD_FILE: MSMg01no425_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:52 2005
(585 letters)
>mm_chr6_52910531_52911516
Length = 986
Score = 1062 bits (549), Expect = 0.0
Identities = 575/585 (98%), Gaps = 5/585 (0%)
Strand = Plus / Minus
Query: 4 gaattcacaggattt--tcccatgtaatgtaaggcatatcaagtgctgtgtcataaatgc 61
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gaattcacaggatttagt--catgtaatgtaaggcatatcaagtgctgtgtcataaatgc 729
Query: 62 acctaaggataactcagtcactggcctggaccccagagcagggcttttgtagcgctaagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 acctaaggataactcagtcactggcctggaccccagagcagggcttttgtagcgctaagg 669
Query: 122 aaagtatcttgttaaaaaatagccgctaaaagattttgtgtgggttaagaatagattgtt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaagtatcttgttaaaaaatagccgctaaaagattttgtgtgggttaagaatagattgtt 609
Query: 182 tgtgagtctcacttgctttctatatcagaatcccctgggcctgtaatccctctgtctcac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tgtgagtctcacttgctttctatatcagaatcccctgggcctgtaatccctctgtctcac 549
Query: 242 ctacatggacaggcgtctaaagggccgacctctgtgttttctgtacctagcctactcatg 301
|||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctacgtggagaggcgtctaaagtgccgacctctgtgttttctgtacctagcctactcatg 489
Query: 302 agacgtcttctgtggccttagtagagcttt-ttggtgtcctccagtgttgttgtaaaccc 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 488 agacgtcttctgtggccttagtagagctttattggtgtcctccagtgttgttgtaaaccc 429
Query: 361 tagcagccaagcactgggatcaggacaagggccagagagtagctttttcataaattagat 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 428 tagcagccaagcactgggatcaggacaagggccagagagtggctttttcataaattagat 369
Query: 421 tttaatcaaatatttgctataagtaatatgatgagggaatacttagcctccttctggaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tttaatcaaatatttgctataagtaatatgatgagggaatacttagcctccttctggaca 309
Query: 481 gtgctgatgagacagggaaacattcagggagggcttgtttatcctaactgagctttgttc 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 308 gtgctgatgagacagggaaacattcagggagggcttgtttatcctaactgggctttgttc 249
Query: 541 aaatccagtctttcctgcccatcctctgtggtctggaaaatgaga 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaatccagtctttcctgcccatcctctgtggtctggaaaatgaga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 986
Length adjustment: 10
Effective length of query: 575
Effective length of database: 976
Effective search space: 561200
Effective search space used: 561200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_j17.g1 MSMg01no425_j17.g1 CHROMAT_FILE:
MSMg01no425_j17.g1 PHD_FILE: MSMg01no425_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:52 2005
(306 letters)
>mm_chr6_52725552_52726257
Length = 706
Score = 505 bits (261), Expect = e-147
Identities = 276/281 (98%), Gaps = 2/281 (0%)
Strand = Plus / Plus
Query: 1 tctcaggacagctctgctgctctacagccacagggcagctcagcatcttgctgggaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcaggacagctctgctgctctacagccacagggcagctcagcatcttgctgggaggag 260
Query: 61 tggctaggggtttctctgtgctatgtcacctggcattctgaatcagtaagggacacagtt 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggctaggggtgtctctgtgctatgtcacctggcattctgaatcagtaagggacacagtt 320
Query: 121 ccctcacagccactagagccatccgctactcagttcctgcagcacagggtcactaagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctcacagccactagagccatccgctactcagttcctgcagcacagggtcactaagttt 380
Query: 181 gctcttggccttaacaggagagagcattcaaagcccatgtgaacccaggcttcgatagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcttggccttaacaggagagagcattcaaagcccatgtgaacccaggcttcgatagag 440
Query: 241 gaagaggtttctagagactcttcaacgaat-aagggtgggg 280
||||||||| |||||||||||||||| ||| ||||| ||||
Sbjct: 441 gaagaggttgctagagactcttcaac-aattaagggagggg 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space: 207009
Effective search space used: 207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
