BAC Information

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BAC

Clone NameMSMg01-426L23
Chromosome6 (Build37)
Map Location 117,299,973 - 117,300,414
singlet/doubletsinglet
Overlap geneEG640142
Upstream geneMarch8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422
Downstream geneLOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426L23.T7 (MSMg01no426_l23.b1)MSMg01-426L23.TJ (MSMg01no426_l23.g1)
ACCAG520113AG520114
length794776
length of high quality
(start - end)		416 (47 - 462)443 (77 - 519)
definitionCHROMAT_FILE: MSMg01no426_l23.b1 PHD_FILE: MSMg01no426_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:24 2005CHROMAT_FILE: MSMg01no426_l23.g1 PHD_FILE: MSMg01no426_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGATTACTACCGAATGGCAGAGAAGCACTTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAAAATGAATTTATGAAATTCCTCACCCA
ATGGATGGACCTGGAAGGCATCCTTCTGGAAGGAGGGAACCCCTTCCCCC
AAAAACCCCCCCCATATGGATTCCCTGATAAGGGGTAATTAACCCCCCCC
CTCCGGAACCCCAAAAATAAAAAATATTTTTGTTTAACCCTGGAATCCTT
AAAAAAGGAAAAATGAAGGGTGGAACTATTCCCCCCCCTCCCTTCGGGAA
AAAACCCCCTGTCAGGGGTTCAAATACACTTATTTTTCTCTATA

CCATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATGGAAACACACTACATCAAGC
ATGATGAGATGAAGATGAAATAAATATTAGAATTCTCACAGCAATGACCT
CCAGTGAGAATGTACTGCATAAAATTGCAGAGAAGGAATTTATAAGAACG
ATTATAAGAATGTACAAAGAAATAAAAACAGCATAAATTTCTGAATAAAT
TCCAAGAGATAAAAAAAACACAGCACTATTAAATAAGAAGTTAATATAGT
ATGTGAAAGAAAAGACTTCAATTAAAGGAGAGCTATGCTGGAGAAAAACC
AAACCAAAATGTTGGAAATCAAATTTCAGTAAGTCCACTAAAAATCTCCA
TGGAAAATCTCACCAATTCAGGATCAAGGAAAAAAAATCTTTGGGCCTTG
AAGACAAGGGGGACTAACTGGAAAGTTCAGACAATGACAAAGATAAATTA
ATAAAACAGCATGAATAGAATGTCTGTGATCTATGAACCGCCTTGAAGAA
CGAAACATATAATCCCCAGGATAAAAAGGGAGGAAAATAAACACATGAAA
CTCTAGAAAATGAAGACTGAAGTGTGACACTATGCCCCTCCTATAAGGGG
AACAAAACACCCTTGTAGGAGTTCCGAAAAAAAGTTGTAGCTGAAATAAA
GGGGGGACCCGTTAAAACGGCTTATTCAGGGATCCCCCCCAAACCGATTC
CAACGCGGAACCATTGTTTAATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_l23.g1 MSMg01no426_l23.g1 CHROMAT_FILE:
MSMg01no426_l23.g1 PHD_FILE: MSMg01no426_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:24 2005
         (443 letters)



>mm_chr6_117299773_117300614
          Length = 842

 Score =  849 bits (439), Expect = 0.0
 Identities = 442/443 (99%), Gaps = 1/443 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatggaaacacactacatcaagcatgatgagatgaagatgaaataaatattagaattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatggaaacacactacatcaagcatgatgagatgaagatgaaataaatattagaattct 260

                                                                       
Query: 61  cacagcaatgacctccagtgagaatgtactgcataaaattgcagagaaggaatttataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacagcaatgacctccagtgagaatgtactgcataaaattgcagagaaggaatttataag 320

                                                                       
Query: 121 aacgattataagaatgtacaaagaaataaaaacagcataaatttctgaataaattccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacgattataagaatgtacaaagaaataaaaacagcataaatttctgaataaattccaag 380

                                                                       
Query: 181 agataaaaaaaacacagcactattaaataagaagttaatatagtatgtgaaagaaaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agataaaaaaaacacagcactattaaataagaagttaatatagtatgtgaaagaaaagac 440

                                                                       
Query: 241 ttcaattaaaggagagctatgctggagaaaaaccaaaccaaaatgttggaaatcaaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaattaaaggagagctatgctggagaaaaaccaaaccaaaatgttggaaatcaaattt 500

                                                                       
Query: 301 cagtaagtccactaaaaatctccatggaaaatctcaccaattcaggatcaaggaaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtaagtccactaaaaatctccatggaaaatctcaccaattcaggatcaaggaaaaaaa 560

                                                                       
Query: 361 atctttgggccttgaagacaagggggactaactggaaagttcagacaatgacaaagataa 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 -tctttgggccttgaagacaagggggactaactggaaagttcagacaatgacaaagataa 619

                                  
Query: 421 attaataaaacagcatgaataga 443
           |||||||||||||||||||||||
Sbjct: 620 attaataaaacagcatgaataga 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 842
Length adjustment: 10
Effective length of query: 433
Effective length of database: 832
Effective search space:   360256
Effective search space used:   360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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