BAC Information

Click to search

BAC

Clone NameMSMg01-427A13
Chromosome6 (Build37)
Map Location 116,860,690 - 116,861,196
singlet/doubletsinglet
Overlap genenone
Upstream geneIft122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik
Downstream geneLOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427A13.T7 (MSMg01no427_a13.b1)MSMg01-427A13.TJ (MSMg01no427_a13.g1)
ACCAG520331AG520332
length7421,687
length of high quality
(start - end)		528 (56 - 583)---
definitionCHROMAT_FILE: MSMg01no427_a13.b1 PHD_FILE: MSMg01no427_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:47 2005CHROMAT_FILE: MSMg01no427_a13.g1 PHD_FILE: MSMg01no427_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAAATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTTCCCTCTATGTGTTGATGGAGGCGGGAAGAAGC
TGTAATGTGCAATTCTGATTTTAATCTTTAAAAACAGGTTCAGAGCGTGT
GCTTCCCCAGTGGACTTTGGACCAATTGCCTTTGGATTGAGTTTCTGGCA
TAACTTAGTTTCAGCTCCCTCAGAGAACTAACGATTTTACCGGTTTGGCA
ATGTGGGCGAGGGGTAGTGAGCACCCTTGTTACAGATTCCCATTGACTCG
ACTAGCAGCCTTGGCAGGGAGACTGAAATGTTAGTGCCCCATTTCATCCC
TACATCCAATCAGAAATGATCCCTGGGCTCTCTGCCCATCGAGGTGCCCT
TGGATTAAACTCCTCTCCCTAGCAACAGTGTGGGTGAGGGAGAGTGTAAG
CCATTGTCTGATGAATGTCTTTGGTCTCACCCAGATTTGTCCAACAAGAC
TGAAGCTTTTCCCCGACATCTTCAGTTTTGGGGGTTCACTGCCAACCAAC
TGTGTCCAGCTGTCCAGTTAACTCTTCTGCAATGCCCGTGCTTGTGAGAG
TGNNGATTCCCACTGACTTCACTGGCATTGCTTCAGTAGATGTTGATAAA
TGAAAAATTTTAATAACTTTACAGCCCCCATTTGATAAAAGAAATGTTAA
TGGCTTGGCTCTAAGGGGGTCCTCCAAAAGGTCTTCTTCCTT

AATATAATCCGAATGATCGCGGGTGCGGGTNGCGGTGAAGCCGGGGTGTC
GAGAGCGAGTATCTCCTCTTCAATAATATATAGTGCTAGATGTACGACAC
TGTCATAATGGATCTCTCACACGCATAATTTCACCCTGTCACCACACACA
ATACACGTTAGTATGTGGCGCCAGGGAAGTATTCAGTTTGGTGGATAGGA
TATCTCAGACGTTATAAATAATATTCAACACTCCACTACTCGTTAATCTC
GAAATATACTTATTACAATAACATTATCTAGCGTTGTGAGTGGTATTGGT
GTGGTATTCCTCTATATCGAGGCGTGGTTTGAGTGTGGGTGAGCTATGCG
TCGTGTGTTGAGATAAGACCTCTTTTCCTAGGTTTTTCACCTTACTTCTC
TTCTCTTATATACGTTACTACATGACTAGGTACTCAAAATATAATAGAGT
CAGCGATATTCATTACTCCTTCTATATTATCATTAATCGATCTGCGCATA
TGAATCACAGTATTAGCGCTTGCTTACAGTACACCTCACATATCTACCTT
ATATATATTCGCACAATAATGCCACTGTNTATAGACTGCATCAGAGNAGG
AGGGCGGCGGAGCCTCGGAGATGCGTACAACAGTGAAGAGCCATNAAGCG
AACAGCAAGAGGAGCGTAGTACATGAATACACTACGAGGTAATCTCTCCG
TCTATACTACTCTCTGTAAGTGACGTAAAGTGTAACGAGTCGTGTAACCA
GCCGTTCGCGAATATGTANTATACAGTTCTATGATGGCACTGACGGCACT
TGCATGACTAGCGTGATGTATCGCACCACTCACGATACACACAACCACCT
ACTCCCTCTCCTACTAAAGTCCGCCTGACTTTGCATCGTTATACTATGTT
TGACTTGCGACTAATATATACAGACTTACATACCGTGTATAGTATAGCTA
TATGTATTATGAGTCCAGTCCAGTGNATATTATGNCGCCTGAATTGCTAC
AGAATCCGCGCATCTNTTAGTCGGATGTAGACGTTGTCGCACGGCGCCAG
TTATGCACATGTCGACACCGCACANTAGCGAGCCACTAACACTCACACTA
CAACGACATGAACGTAGACATGCTGTCGNATGGGCGGAACTCTCNGACAG
CGAGACGACTNTGTAGATCGATCCACATAGANGTCATATGGCGCACGAGT
CTGGCACATATACATTCTCGATCTCTACCATAGTACTCGCACGCACACCG
TAGCACTTTTAGCATAGATAACAGTATCACAGATGCATACATAGCGTGCT
CATACCACAGTTAAGTAATATGATCTCGTGTGTCAACGCTGTCGCGTCGA
CAATATCTGAATATTGTATCTAGCGAGACGAGACTACGTCGCTCGAGATA
TCAATGCAACTCGATGATANCNCTAATGATCGANCGAATGTAGCATCAGT
GATGNACTAACAAGCAAGATTATAATGCGCTCGCTGTGATGTGATCACTG
TATCTCCTCTATATGCGGACATGTGATATGTACGACACTGCAGACCACAC
ATCACAGAGCTCTCGTATATACGCGACGATCGGTATACTCATNCGACATA
CGCGTNCATCCGGCAGCGCATGTGAGACTACGACTAACATACTACATAGC
TACACACCACNATCATTNTCATANCATACTCCCACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_a13.b1 MSMg01no427_a13.b1 CHROMAT_FILE:
MSMg01no427_a13.b1 PHD_FILE: MSMg01no427_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:47 2005
         (528 letters)



>mm_chr6_116860469_116861396
          Length = 928

 Score =  864 bits (447), Expect = 0.0
 Identities = 492/507 (97%)
 Strand = Plus / Plus

                                                                       
Query: 22  gtgttgatggaggcgggaagaagctgtaatgtgcaattctgattttaatctttaaaaaca 81
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 222 gtgttgatggaggcgggaagaagctgtaatgtgcaattctggttttaatctttaaaaaca 281

                                                                       
Query: 82  ggttcagagcgtgtgcttccccagtggactttggaccaattgcctttggattgagtttct 141
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggttcagagtgtgtgcttccccagtggactttggaccaattgcctttggattgagtttct 341

                                                                       
Query: 142 ggcataacttagtttcagctccctcagagaactaacgattttaccggtttggcaatgtgg 201
           ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||  |
Sbjct: 342 ggcataacttagtttcagctccctcagagaactaacgatttcactggtttggcaatgcag 401

                                                                       
Query: 202 gcgaggggtagtgagcacccttgttacagattcccattgactcgactagcagccttggca 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gcgaggggtagtgagcacccttgttacagattcccattgactcgactagcagccttggca 461

                                                                       
Query: 262 gggagactgaaatgttagtgccccatttcatccctacatccaatcagaaatgatccctgg 321
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gggagactgaaatggtagtgccccatttcatccctacatccaatcagaaatgatccctgg 521

                                                                       
Query: 322 gctctctgcccatcgaggtgcccttggattaaactcctctccctagcaacagtgtgggtg 381
           | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 522 gatctctgcccatcgaggtgcccttggattaaactcctctccctagtaacagtgtgggtg 581

                                                                       
Query: 382 agggagagtgtaagccattgtctgatgaatgtctttggtctcacccagatttgtccaaca 441
           |||||| ||||||||||| ||||||||||| ||| ||||||||||||||||| |||||||
Sbjct: 582 agggagggtgtaagccatcgtctgatgaatctctctggtctcacccagatttctccaaca 641

                                                                       
Query: 442 agactgaagcttttccccgacatcttcagttttgggggttcactgccaaccaactgtgtc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 agactgaagcttttccccgacatcttcagttttgggggttcactgccaaccaactgtgtc 701

                                      
Query: 502 cagctgtccagttaactcttctgcaat 528
           ||||||||||| |||||||||||||||
Sbjct: 702 cagctgtccagctaactcttctgcaat 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |