BAC Information

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BAC

Clone NameMSMg01-427G21
Chromosome6 (Build37)
Map Location 118,878,936 - 118,879,339
singlet/doubletsinglet
Overlap geneCacna1c
Upstream geneFxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
Downstream geneDcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427G21.T7 (MSMg01no427_g21.b1)MSMg01-427G21.TJ (MSMg01no427_g21.g1)
ACCAG520633AG520634
length765825
length of high quality
(start - end)		409 (78 - 486)---
definitionCHROMAT_FILE: MSMg01no427_g21.b1 PHD_FILE: MSMg01no427_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:18 2005CHROMAT_FILE: MSMg01no427_g21.g1 PHD_FILE: MSMg01no427_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGA
ATCCGCGGAATTCACTCACAGATTACCAACCATCTGTGAAGGACAGGGAC
AGTGCCCTGTGCCCTTTTCAGCTTTGATATCAGAGCACCAAAATGAGAAA
GCTGCAAGAAGAAGGTTCAATGGTAGCCAGTCAGTGTTAGCCACAGAAGC
CGGCTGCAAAGGCGCTAGTCACAAAGGGGGCCTCAGAAGAGCTAAGATTC
CTCCTCCATCCTGTCCCACCTAGCCCACGTGATGTAAGCCAGTCTGTCTT
ACAAGTTCACCAGAGCAGGGTTCTTATTTAGGGAATCTCATTAGCATCAA
CCAGAGCCTGACACAGTAGATGTTGAAAACCAATAAATGTTGGTTAGCAG
CACGCTGTGTTGAGCCTGCCTTTCAGACTTTATGGGGATCCAGTTTGCCC
AGGGAATCTGGTTAANATGTAGATTTTGGGCTCAGATCCAGAATGGGGAT
CCAGGATGTCACGTTTAGAGCTAGCTCCCAATGGAGGATGCTGTCACCAA
TCTTGTCTTTTACTTCTAGTGGNAAGATCCCAGNACGTACAAAAACAAGT
CCAGCAGGGACCATTCTGCTAANCGGGATGCTGTGGGTAAACTTTGCCGC
AAACCCAAAACTGGGGCCCCTGGTTGGAATTTGGGTGGGAAAAAAACANA
CAACCCCCTTTTTTCCTCATTCTGTGGGCCCCCTAATAAATTTTTTATTA
ATACCTCCCCCTCCG

NNNCCCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCGCCCTTCCTCTAACATGAGTAAAATCAAAG
AAGTCGAGCAAATCGTATCTATCTATCTACCCCGTCGTCGCGTCGTCGTC
TGCGTGTNNCCNCCNNNCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCGNC
CCCCCGCCGCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCTCTTTCCCCGGCNGCCCCCCCCCCCCCCCCCCCCC
CTCCCCTCCCCCCCCCCCCCCCCCCCCGCGTCTTTTTTTTCCCCCCCCCC
CCCCCCGCCCCCCCCCCCGTTCCTTCCCCCCCCCCCCCCCCCTCCCCCCC
CGTCGGTCCTCCCTCCCCCTTTTTTCCTTCCCCCCCCCCCCCCCCTCCTT
TCCCTTCCCCCCCCTCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCTCCCCTCCCCCCCCTCCCCCCCTCTCCCCCCCCC
CCTTCCTCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCTC
CCCCCCCCNCCCCCCCCCCCCCTCCTCCCCCTCCCCCCCCCCCCCTTCTC
TCCCCCCCCCCCCCCCCCCCTCCCCCTCTCCCCCTTCCCCCCCCCCCCCC
TCTCCCCCCCCCCCCCCTCTCCCCCTCCCTCCCCCCCCCCCCCCCCCTCT
CCCCCCCCCCCCTCTCCCCCCCCCTCCCCCCCCCCCCTCCCCTCCCTCTC
TCCCCCCCCCCTCCTTCCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_g21.b1 MSMg01no427_g21.b1 CHROMAT_FILE:
MSMg01no427_g21.b1 PHD_FILE: MSMg01no427_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:18 2005
         (409 letters)



>mm_chr6_118878733_118879541
          Length = 809

 Score =  760 bits (393), Expect = 0.0
 Identities = 401/404 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   catctgtgaaggacagggacagtgccctgtgcccttttcagctttgatatcagagcacca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 catctgtgaaggacagggacagtgccctgtgcccttttcagctttgatatcagagcacca 548

                                                                       
Query: 64  aaatgagaaagctgcaagaagaaggttcaatggtagccagtcagtgttagccacagaagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aaatgagaaagctgcaagaagaaggttcaatggtagccagtcagtgttagccacagaagc 488

                                                                       
Query: 124 cggctgcaaaggcgctagtcacaaagggggcctcagaagagctaagattcctcctccatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cggctgcaaaggcgctagtcacaaagggggcctcagaagagctaagattcctcctccatc 428

                                                                       
Query: 184 ctgtcccacctagcccacgtgatgtaagccagtctgtcttacaagttcaccagagcaggg 243
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctgtcccacccagcccacgtgatgtaagccagtctgtcttacaagttcaccagagcaggg 368

                                                                       
Query: 244 ttcttatttagggaatctcattagcatcaaccagagcctgacacagtagatgttgaaaac 303
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttcttatttagggaacctcattagcatcaaccagagcctgacacagtagatgttgaaaac 308

                                                                       
Query: 304 caataaatgttggttagcagcacgctgtgttgagcctgcctttcagactttatggggatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 caataaatgttggttagcagcacgctgtgttgagcctgcctttcagactttatggggatc 248

                                                       
Query: 364 cagtttgcccagggaatctggttaanatgtagattttgggctca 407
           ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 247 cagtttgcccagggaatctggttaaaatgtagattttgggctca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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