Query= MSMg01no427_n15.b1 MSMg01no427_n15.b1 CHROMAT_FILE:
MSMg01no427_n15.b1 PHD_FILE: MSMg01no427_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:50 2005
(581 letters)
>mm_chr6_140605216_140606196
Length = 981
Score = 1027 bits (531), Expect = 0.0
Identities = 575/613 (93%), Gaps = 36/613 (5%)
Strand = Plus / Plus
Query: 5 gaattccttaccctgctgttgggaattgaatttggggccagcaacccactgagttgtctt 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttaccccgatgttgggaattgaatttggggccagcaacccactgagttgtctt 264
Query: 65 ccaggatgactcccctccttcattaaaacacctcccgcatcctaggcctttaacttcttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaggatgactcccctccttcattaaaacacctcccgcatcctaggcctttaacttcttt 324
Query: 125 tgccttaggctcctgaggctgggataaaaggtatgttgccaccttgcctgtctctaaact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgccttaggctcctgaggctgggataaaaggtatgttgccaccttgcctgtctctaaact 384
Query: 185 atttttgatctgtagaagtgtgtggatgggagtcgacagtcgataggcacatactataaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttttgatctgtagaagtgtgtggatgggagtcgacagtcgataggcacatactataaa 444
Query: 245 gaaatggggctgggagtggacttaagatgtggttttgagacaggtggtaagctcctgtga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaatggggctgggagtggacttaagatgtggttttgagacaggtggtaagctcctgtga 504
Query: 305 gacaaaggagttagagccatgcaggcattactagaaaggatgccaacatagggcacatgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacaaaggagttagagccatgcaggcattactagaaaggatgccaacatagggcacatgt 564
Query: 365 agcaaaatgtaaagaccaagaggccagagaatggtagggcatgcattagtttcattctat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcaaaatgtaaagaccaagaggccagagaatggtagggcatgcattagtttcattctat 624
Query: 425 tcccagatagaaatgataaagggactatctcagatttcatttcatttctctctctctctc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcccagatagaaatgataaagggactatctcagatttcatttcatttctctctctctctc 684
Query: 485 tctctctctctctctctctctctct----------------------------------- 509
|||||||||||||||||||||||||
Sbjct: 685 tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc 744
Query: 510 -ttcgggcaggagaactcatcacagatggttgtgagccgctatgtggttgctgggaactg 568
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttcgggcaggagaactcatcacagatggttgtgagccgctatgtggttgctgggaactg 804
Query: 569 aacctctggaaga 581
|||||||||||||
Sbjct: 805 aacctctggaaga 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_n15.g1 MSMg01no427_n15.g1 CHROMAT_FILE:
MSMg01no427_n15.g1 PHD_FILE: MSMg01no427_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:50 2005
(547 letters)
>mm_chr6_140749275_140750221
Length = 947
Score = 1058 bits (547), Expect = 0.0
Identities = 547/547 (100%)
Strand = Plus / Minus
Query: 1 tgaacactagaaatgcctctgggaacacgagtaagtctccacagaaataagtgggtggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 tgaacactagaaatgcctctgggaacacgagtaagtctccacagaaataagtgggtggtt 882
Query: 61 tttattcactgggaaatgaacgaagcaaggatgtactgattagaaatgtgcttgctagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 tttattcactgggaaatgaacgaagcaaggatgtactgattagaaatgtgcttgctagca 822
Query: 121 tcagataaattgcggtttggggacatctgtgaagaactacaagtttgcttatagcaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tcagataaattgcggtttggggacatctgtgaagaactacaagtttgcttatagcaatct 762
Query: 181 attgcctatgaccataacaaaatacctgaggctggtaacataaagaaaggagagttattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 attgcctatgaccataacaaaatacctgaggctggtaacataaagaaaggagagttattt 702
Query: 241 agcccacagttaaatggaggttcaagaacatggctggtgtcaactatgctctggtcggat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agcccacagttaaatggaggttcaagaacatggctggtgtcaactatgctctggtcggat 642
Query: 301 gctcataaaagatggcattcacagtgaaagtgttggtgacagagaccacaagttgagtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gctcataaaagatggcattcacagtgaaagtgttggtgacagagaccacaagttgagtca 582
Query: 361 gtgagtcagagtgaggggaagaggtaatattgcttttcttgtaacaactaccacaatccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gtgagtcagagtgaggggaagaggtaatattgcttttcttgtaacaactaccacaatccc 522
Query: 421 tttcaaaggctgaattcactcctcataccagactccccctatttacatatttcatttaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tttcaaaggctgaattcactcctcataccagactccccctatttacatatttcatttaga 462
Query: 481 cagggtctcactatctgctctggctctcttggaactcactatgtagatcaggctgctctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cagggtctcactatctgctctggctctcttggaactcactatgtagatcaggctgctctc 402
Query: 541 agcccag 547
|||||||
Sbjct: 401 agcccag 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
