BAC Information

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BAC

Clone NameMSMg01-427N24
Chromosome6 (Build37)
Map Location 116,487,848 - 116,488,352
singlet/doubletsinglet
Overlap genenone
Upstream geneTsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212
Downstream geneOlfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427N24.T7 (MSMg01no427_n24.b1)MSMg01-427N24.TJ (MSMg01no427_n24.g1)
ACCAG520971AG520972
length7591,013
length of high quality
(start - end)		506 (54 - 559)---
definitionCHROMAT_FILE: MSMg01no427_n24.b1 PHD_FILE: MSMg01no427_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:52 2005CHROMAT_FILE: MSMg01no427_n24.g1 PHD_FILE: MSMg01no427_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAAC
CGCGGAATTCTCTTTGTATACGCTGTTCATTCTATTACTTGTCTTTCTCT
AGAGAAACTTGACTTATATAGTGGCTCAGAGTTCCAATTCTCTATGTAAC
TTTAAAAAAATAGATCAAGTTAGCTCTTCAGTTCTGGCTGTCGTGGTAGT
CATTGTGAATTCCAGGCCAATCTCAAACTCATGGGAATCCTCCTGCCTTA
GTCATATGAACGCATGGACTATAGGCATGTGTCATATTACCTACCTTCAT
TTGATCTTTCAGGCCTACATTAACAATATTATGTTATTTGGGAATTTATG
AACCTTGAGAGATTATATGTATTCCAATTTTAAATATTTTCATGAAGACA
TTTTGGAACTCATATTTTTGTACACAATGAAAGGGCAACCATTATATTAT
CTAATCATTACTTGTTATCATTATTATCATTAGTCAAATGATATTCCATT
CACAATATTGTTAAATTACCAATCATAAGGGATCCTAGATTGACATCCAA
TAATGATACTTAGTGTCTCTTGGTGCTGCCCACTGGACCTGGGAAAACCT
GATTAGTATCAAGAGACAGCCACTAAGAAATATATGTTGGAACAATTCCT
GCCCCTGGCATTTCCGCTCCTGGGGGAAAAAGACTCTCCGCCTGAAATTG
AAGGTTTTGTTGGGGGGGAAAAAAGGAAAAATTAAGGCCTTGCAAAGGAT
TTTTAAAAG

NCAATGCANGTGGGTANGCCTGGGCGGGCGCCTGGCTCTCCGACATTTAN
GTGGACGCTATCAGCTAGGATTGCCGGGANNTNCGAGTTTTATTGTGTAA
TACTCGAAGNTCTTATANAAAATGGANNTAAATGTTTTTACTGGGANNTA
NAATGGNCCCATTTGCCTGGTCTTAAATAANGTTTTAAGCAATTCCCATG
GGCAATAAAATGGTTTGGAAGGCAAAGGGACCAATAACACTTTTTTTGAA
AACTTCTCCCTGGGTGGCAAGAGAACAACAAAAAAAACCCTGGAAAAATA
TTCCTCCGGCGAACCGGGGATAATATTTTTATTTTCCCCAACTCGGGGAA
AGAGTGGGTATACCCCTTGTTCCCAAAGTGGTGAAATAAAAAAAAGCCCC
TCCGAGAAAATATCCCCAAATAGAGCCGCCCGGAGAAGAAAAAGAAAACA
AAATAAAAACAAGGTTGTTTTATAACATCCCTCCCTCTCCTCCCCCCTCT
TCTTNTTTTTCTTCCCNCCCCCTCTTATATATATAAAAAAAAAAGAAAAA
ATATTCTTTTTTCTCTTTCTGTTGGTGGGCCCNCCCCCCCCCAACACATA
AAAAATCCTTCCCCTCTCTAATAAATATTTTTCCGGCGCTCTCCACACCC
CCCCTCCCCCACCCACCATCAAAAAACAAAAAAANACAAAACGCCGCGCG
GCACAAAAAAAACAATAATTCTTGTCTCCCCCCCCACTTCTCTTTTTTCT
CTTTTTATAAATAATACCATCACCCCTCCTTTTACACTCAACATACCCTT
CCTTCCTCCCCCCCTTTCCCCCCTTTCCCTCTCCCTTACTTCTCTCTCCT
AATAAATCACTCATACTCCATACCACCCACTTCTCTTCCTCCCTTCTTTT
TCTTTCTACTCCTCTCTCTCCCCCACCCTCCCTTATTATTTCCTACTCCT
ATCTTCTTCTACCCTCCTATCTCTTCTCCTCAACTATATAGCGGAGGGAG
CGGGTGGTGCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_n24.b1 MSMg01no427_n24.b1 CHROMAT_FILE:
MSMg01no427_n24.b1 PHD_FILE: MSMg01no427_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:52 2005
         (506 letters)



>mm_chr6_116487647_116488552
          Length = 906

 Score =  930 bits (481), Expect = 0.0
 Identities = 500/507 (98%), Gaps = 4/507 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattctctttgtatac--gctgttcattctattacttgtctttctctagagaaacttga 59
           |||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctctttgta-acatg-tgttcattctattacttgtctttctctagagaaacttga 259

                                                                       
Query: 60  cttatatagtggctcagagttccaattctctatgtaactttaaaaaaatagatcaagtta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttatatagtggctcagagttccaattctctatgtaactttaaaaaaatagatcaagtta 319

                                                                       
Query: 120 gctcttcagttctggctgtcgtggtagtcattgtgaattccaggccaatctcaaactcat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gctcttcagttctggctgtcgtggtagtcattgtgaattccaggccaatctcaaactcat 379

                                                                       
Query: 180 gggaatcctcctgccttagtcatatgaacgcatggactataggcatgtgtcatattacct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gggaatcctcctgccttagtcatatgaacgcatggactataggcatgtgtcatattacct 439

                                                                       
Query: 240 accttcatttgatctttcaggcctacattaacaatattatgttatttgggaatttatgaa 299
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 accttcatttgatctttcaggcctacattaacaatattatgctatttgggaatttatgaa 499

                                                                       
Query: 300 ccttgagagattatatgtattccaattttaaatattttcatgaagacattttggaactca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 500 ccttgagagattatatgtattccaattttaaatattttcatgaagacatttgggaactca 559

                                                                       
Query: 360 tatttttgtacacaatgaaagggcaaccattatattatctaatcattacttgttatcatt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatttttgtacacaatgaaagggcaaccattatattatctaatcattacttgttatcatt 619

                                                                       
Query: 420 attatcattagtcaaatgatattccattcacaatattgttaaattaccaatcataaggga 479
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 620 attatcattagtcaaatgatattccattcacagtattgttaaattaccaatcataaggga 679

                                      
Query: 480 tcctagattgacatccaataatgatac 506
           |||||||||||||||||||||||||||
Sbjct: 680 tcctagattgacatccaataatgatac 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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