BAC Information

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BAC

Clone NameMSMg01-428D12
Chromosome6 (Build37)
Map Location 106,005,994 - 106,006,234
singlet/doubletsinglet
Overlap geneCntn4
Upstream geneLOC384470, LOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428D12.T7 (MSMg01no428_d12.b1)MSMg01-428D12.TJ (MSMg01no428_d12.g1)
ACCAG521235AG521236
length735734
length of high quality
(start - end)
51 (250 - 300)243 (73 - 315)
definitionCHROMAT_FILE: MSMg01no428_d12.b1 PHD_FILE: MSMg01no428_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:20 2005CHROMAT_FILE: MSMg01no428_d12.g1 PHD_FILE: MSMg01no428_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCATAATTTGCGGCGNNAAANGAANCACATTCGTATCCGAGGGGNGGA
ANNCNCAATTTCTNCCCTTCGGGCGGNAAAAAAAAGNNCCAAGGGGCGCC
CCACANAGGAGAGCACCAACAACCANACANNAGAAGAANNAGCGCCCNGA
GGCCNTTGNNCAACCAGCGGCCAGNNCGCNGGCGACGGCACAAACCCACN
ACANCAAACNCAACCAGGAACGGNCCCGGCAAGGGGCAGCAATTTTATTG
ATTAATTCATTTATATTCCTGAAATAAGATATGTTCTCCTGGATGAGCCT
CCTCAGCTTTTTTTTTTACAGNACACANNNCAGCANCNCAAAACGGCCCN
NNGTTCACCCCGCCACCCCAAGCCGAGCACCGAGNACCGACNAGCNCGGC
CGACCCAAAAGGAGAGACAGGACGCGGCACCGGNCGAGNACACCACCGCC
AAGACCACCACAGNNCGGAGCGCAGGCGACCGGAAACACCCCAGGCCNCC
GGCACAAACCCACGGAGCGGCCACCAGCACACCGCCCAANAAGCCCGCGG
GGCGGGCCCACCACGCACCAAGGACACGCCCCCCCACAAGCCGCANACAA
CAAAGCAGCCACAACGGCGAACGCAACGGCGCCAAGAGGTTTTTTCTCTT
CAATTCCCACCATCTACTCAACGGCCCCCTAGTATCCCTCCCTCCACCCC
CCCCATTAAATTGCCCACACCCCTTTTTCACTGCC
TCTTATGATAGTGGTAGGCCTGGNGGNCGCCTTTTCAAAAAATTTAGGTG
AACTATAGATTGACACAAAAAATTCACAGATAATTACACTTTGAAACTCT
TGTGAGAAATTTACAATATACGTATAAAAATATTTGTATCCCTCTTTTTA
TTTTTGTTAAAATGTATTGCCCAGACTGTAATTGAGCTGTACTACTGATA
AAAGACTTACAAAATCTGGAAAATAGATTTGTTTTAATGAAAAGAATATG
CCTGAAACATTACATTTCCTCCTTTCCAAAATAACATGTTTTTTGAATAA
CAATGTGGCTACTCNCTCNGTTTAAAGCCAAAATCACCACTAATCATCAA
AGTACGACTTTTATCATCTTCCCCAACTGGCTGGCCATTCTTTCATCCCA
AATCTAAGCATAGAAATTTATGCTTTCATTGTAATAACTGATGAGCCCCA
CAGGCTTTCTGCTAGGCTTGATGCTAGTTTCTACACTATGAGTTACCATA
ACCACCAACCGAAGAACATGCATGGGCTAGACGTTGATCCTGTATGCATT
CATAGCAGATGAGCAGCTTGGTCTTCATGTGGGTCTCCAAACAATTGGAA
AGGAGGCGGTCTCTACCTCTGTTGGCTACCCATTGGATCTCCTTCTCCTA
ACTGGACTGCCTGGTCAGGCATTATTGCCAGAGGATTCACTTATGCTCAC
TGTGACTGGATACTCCTGGGTGGCATATCACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_d12.g1 MSMg01no428_d12.g1 CHROMAT_FILE:
MSMg01no428_d12.g1 PHD_FILE: MSMg01no428_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:20 2005
         (243 letters)



>mm_chr6_106005794_106006436
          Length = 643

 Score =  427 bits (221), Expect = e-124
 Identities = 236/241 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcacagataattacactttgaaactcttgtgagaaatttacaatatacgtataaaaata 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 ttcacagataattacactttgaaactcttgtgagaaatttacaatataggtataaaaata 382

                                                                       
Query: 61  tttgtatccctctttttatttttgttaaaatgtattgcccagactgtaattgagctgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtatccctctttttatttttgttaaaatgtattgcccagactgtaattgagctgtac 322

                                                                       
Query: 121 tactgataaaagacttacaaaatctggaaaatagatttgttttaatgaaaagaatatgcc 180
           |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 321 tactgataaaaggcttacaaaatctggaaaataggtttgttttaatgaaaagaaaatgcc 262

                                                                       
Query: 181 tgaaacattacatttcctcctttccaaaataacatgttttttgaataacaatgtggctac 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tgaaacattacatttcctcctttccaaaataacatgtcttttgaataacaatgtggctac 202

            
Query: 241 t 241
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)