BAC Information

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BAC

Clone NameMSMg01-428D15
Chromosome6 (Build37)
Map Location 123,220,910 - 123,221,184
singlet/doubletsinglet
Overlap geneClec4d
Upstream geneKlrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n
Downstream geneClec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428D15.T7 (MSMg01no428_d15.b1)MSMg01-428D15.TJ (MSMg01no428_d15.g1)
ACCAG521241AG521242
length748741
length of high quality
(start - end)
495 (47 - 541)241 (80 - 320)
definitionCHROMAT_FILE: MSMg01no428_d15.b1 PHD_FILE: MSMg01no428_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:21 2005CHROMAT_FILE: MSMg01no428_d15.g1 PHD_FILE: MSMg01no428_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTCCCTTTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGTATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTTTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCTCTTTTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTTTGTGAAGATCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACATGATAACTACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGCGTGGGCTCATTTCTGGTTCCTCCATTCTATTCCATT
GGCCTACTTGCCTGTCATCATACCATTACCCTGCTTTTTTTATCACAATT
CGCCTGTACTATATGTTCTCGTCTCGTTTGGCGATTCTACCATACTTTCT
TACCCCTTTTGTATAGTTTTTGCCATCCTAACCTTTTTGTTACCCCTG
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAGGGAAAAAATTACTG
ATTTTAAAAGAGAAAGGAAGAAATGTGGTTTCTCCATACTGAGATGTCCT
TTGAGTGTTAAGTGCACATGAATTTACTGTGTTAAAACATTATTAATAAT
TGATAGTTAATGTATTATTACCATAAGTTTTGCCGGTTGTTCTTTTTTAT
TGTCTTTCTGGTGTGTGTGTGTGTGTGTTGTTGTTGTTTTTCATTTAAAG
CATTGTCTTGCTATGTACTTTTTTTCTCCCTANAACTCACAATGTANTCC
AGGGNTGCCTCAAATTATCAACTCTCTCAATCCCAACTCATAAATACAAG
GATTATGTGTGTGAGCCACCATATCTAACTTTTATTTTTTAATTTCTTCA
CATGACTTCTAGGAAATTCAACCTATATATGTTGTATTATTATATTACCA
TGATTCAAAAAAGATAATTAACAGGTTAAAACTCTTTTCATATAATTTTA
GCTCTTACATTACTGTTTATCTAACTGATCATCTTAACAAGCCCTTTGTA
TATTACTCTCATCATGTCTGTACTTTCATAACACCTGTGCCGAAGTCTTA
TTTTTTTTCTTGAGTGGTAACTCATATATTCCCCACCCGCCCCCTTTGCT
TCTGTCTTCTTTACCTTCCCTTTTCCTTTTTGTATCCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_d15.g1 MSMg01no428_d15.g1 CHROMAT_FILE:
MSMg01no428_d15.g1 PHD_FILE: MSMg01no428_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:21 2005
         (241 letters)



>mm_chr6_123220785_123221426
          Length = 642

 Score =  342 bits (177), Expect = 9e-99
 Identities = 234/275 (85%), Gaps = 36/275 (13%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaagggaaaaaattactgattttaaaagagaaaggaagaaatgtggtttctccatac 60
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcagaagggaaaaaaacactgattttaaaagagaaaggaagaaatgtggtttctccatac 341

                                                                       
Query: 61  tgagatgtcctttgagtgttaagtgcacatgaatttactgtgttaaaacattattaataa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 340 tgagatgtcctttgagtgttaagtgcacatggatttactgtgttaaaacattattaataa 281

                                                                       
Query: 121 ttgatagttaatgtattattaccataagttttgccggttgttcttttttatt-gtctttc 179
           ||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct: 280 ttgatagttaatgtattattaccataagttttgccagttgttcttttttttttgtctttc 221

                                                                       
Query: 180 tggtgtgtgtgtgtgtgtgt---------------------------------tgtt--g 204
           ||||||||||||||||||||                                 ||||  |
Sbjct: 220 tggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatgtgtgtgtgtgtgttttg 161

                                              
Query: 205 ttgtttttcatttaaagcattgtcttgctatgtac 239
           |||||||||||||||||||||||||||||||||||
Sbjct: 160 ttgtttttcatttaaagcattgtcttgctatgtac 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space:   146856
Effective search space used:   146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)