BAC Information

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BAC

Clone NameMSMg01-428L16
Chromosome6 (Build37)
Map Location 44,839,861 - 44,840,520
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428L16.T7 (MSMg01no428_l16.b1)MSMg01-428L16.TJ (MSMg01no428_l16.g1)
ACCAG521627AG521628
length7431,353
length of high quality
(start - end)		664 (47 - 710)---
definitionCHROMAT_FILE: MSMg01no428_l16.b1 PHD_FILE: MSMg01no428_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:00 2005CHROMAT_FILE: MSMg01no428_l16.g1 PHD_FILE: MSMg01no428_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGTTCTTGATTGTAATGTGCACTTATCCACTAGATCAAATTG
GTTAATTGCGTGATTAAGGTCTTTTGTATTCTTAGTGATTTTCTCTGCCT
AATTTACCAATTACCAAGAGAAGCATATTAAAATTCTCCTTCTCTATCAG
TTGATTTGTCTCTCTTCCCTGCAGATCTGTAAATTCTTTTAATATTTTTA
GCTTGTTTGTAGGTTCATGTAACTTATTAATCTTTACATTCTTTTCTTTA
TTGAAATTTTATCAATGTATAGAGGCCATTATTGCATAAATTCCATGGGT
CAGAAGTCTAGCAATGACCTACTTTGGTCTTCTATTAATAATAAGTCAAG
ATAGTGATCAATTACCTTACAATCAAAGGGCATGTTGTGTCTCTTTTCTG
CGATCAAACTTCCCAGTATGCAATCATTCACCTGTTCACTGGAGCAATTT
TATGATGCTGAGAGCCTATATTATTTGTGCTTTCTTTAGTATTTTTGTCT
GTCTTTTTAAATACAGAAGAATATCATGCTACTTTAAGAAAGAGATATGT
TTAATATAAAATTAGCTAAATACCCTCTACTAGAGACTCATTTTCTTCTT
ACATGCTATGCAATAGACATATTGCCTTGGAATGAGAGTTAGCTATATTG
TACATAATGTATTTGTTTCAATATTAATGCAAATCAACAGTGA

TACTAGAGAGATACTGNGAGAGAACGCAGGGANGAGTTGTTTTGGCGTAC
CCNTTATCGATGCCNCGGGGGNNNNNNNNNNGNGNGTTTANACCAAAAAG
AGAGAGAGAGGAGNNGNNNNGAGAAAGAAGAGAAAGAAAAAACCGAAGAG
AAAGAAGCAGAAGACACCATCTATATACACCACTGTCCTGCNCGACGAGC
CGATTATATATTATATCGTGAGAAGTGGTACGAGTATAATGTGTTCTAAG
ATAAGGAGTGGTGGGGAGATGAAATAAGTATAATGACGGTTTACTTGATG
TTGAATATTATAAGATATATGTACGTATACGCGTACATTNATGAGGAGAT
TAAGGATCCGCCGACTATAACTTATTGAGANTACTTCTTGTAGTTATTGT
ATATAACGAGACAGTGCATGGATAGGANCCGAGGTAGCGATGCCGCATGC
GATTAGTGATGATGCAGTAAGTCCGTTATACGTATAGAGAGATGTAGAAA
ACGTAACACGATGTTTTGTCTTTTTCTGTTAATATACNAANAGAACAGAC
ACTGAGAACGTAGTATCAAATATACAGTGTTCGTACCATGTGCTATCTAA
GTTTATGAGTTGCTTGATAATACATAGAATGATGAGAACAGAGTACGCGA
TGAGACATAGAGGACTGCATAACTGTTGTAATTAGCACTATAACCACACC
TATGATTGGCGGAATATTGTACTATGATAGATAAGATTGAGTAAGTTAAG
AAGACTGTAACGATATAATNTATACACCAGACGAACGCGCGAACAAACGT
AGTTAAAGACCGTAGTATGTACGAAGTAGATCCATATACGATTAGATTAG
AGACTATACACAAGTAACAGAGGTAAAGTCTATACGAATTATACATATAN
ATCGCGCATATACATACAATCGTGTCACTATANATTATGTAGATATACTC
TTCAGACAATTGTCGACGTATGATAAGTCATCCGTATAACTTGAATCATA
TTCAAATGCAGAGAACATCAAGTGTGCACATAGAGATTGATAATAAGACA
TAANTNCATAATAATACATAATGGTATACAAGACTCTTTCGATTATANAC
ATGNTGACGTGAGTCATATACACAGATAGCGATGAANCGTGTATAGTCAT
ATATTCTATACTAATATACCTTATGTAACATACAGTCACGACGATATCAT
TCGCGATGCCACTACAACNCATACGACTGCCTACTACCGATGATCTCGAA
CGTCTATANGTGTGATTAGTCAAGNCGATGATAGAGCTATGAGCGGTATN
ATAACAGCATATATTATAGGCGACATAACCGGCAATATAACTAACAATAC
ACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_l16.b1 MSMg01no428_l16.b1 CHROMAT_FILE:
MSMg01no428_l16.b1 PHD_FILE: MSMg01no428_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:00 2005
         (664 letters)



>mm_chr6_44839657_44840720
          Length = 1064

 Score = 1245 bits (644), Expect = 0.0
 Identities = 656/660 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgttcttgattgtaatgtgcacttatccactagatcaaattggttaattgcg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgttcttgattgtaatgtgcacttatccactagatcaaattggttaattgcg 264

                                                                       
Query: 65  tgattaaggtcttttgtattcttagtgattttctctgcctaatttaccaattaccaagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgattaaggtcttttgtattcttagtgattttctctgcctaatttaccaattaccaagag 324

                                                                       
Query: 125 aagcatattaaaattctccttctctatcagttgatttgtctctcttccctgcagatctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagcatattaaaattctccttctctatcagttgatttgtctctcttccctgcagatctgt 384

                                                                       
Query: 185 aaattcttttaatatttttagcttgtttgtaggttcatgtaacttattaatctttacatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaattcttttaatatttttagcttgtttgtaggttcatgtaacttattaatctttacatt 444

                                                                       
Query: 245 cttttctttattgaaattttatcaatgtatagaggccattattgcataaattccatgggt 304
           |||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 445 cttttctttattaaaattttatcagtgtatagaggccattattgcataatttccatgggt 504

                                                                       
Query: 305 cagaagtctagcaatgacctactttggtcttctattaataataagtcaagatagtgatca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagaagtctagcaatgacctactttggtcttctattaataataagtcaagatagtgatca 564

                                                                       
Query: 365 attaccttacaatcaaagggcatgttgtgtctcttttctgcgatcaaacttcccagtatg 424
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actaccttacaatcaaagggcatgttgtgtctcttttctgcgatcaaacttcccagtatg 624

                                                                       
Query: 425 caatcattcacctgttcactggagcaattttatgatgctgagagcctatattatttgtgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caatcattcacctgttcactggagcaattttatgatgctgagagcctatattatttgtgc 684

                                                                       
Query: 485 tttctttagtatttttgtctgtctttttaaatacagaagaatatcatgctactttaagaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttctttagtatttttgtctgtctttttaaatacagaagaatatcatgctactttaagaa 744

                                                                       
Query: 545 agagatatgtttaatataaaattagctaaataccctctactagagactcattttcttctt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agagatatgtttaatataaaattagctaaataccctctactagagactcattttcttctt 804

                                                                       
Query: 605 acatgctatgcaatagacatattgccttggaatgagagttagctatattgtacataatgt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acatgctatgcaatagacatattgccttggaatgagagttagctatattgtacataatgt 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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