Query= MSMg01no428_l22.b1 MSMg01no428_l22.b1 CHROMAT_FILE:
MSMg01no428_l22.b1 PHD_FILE: MSMg01no428_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:01 2005
(501 letters)
>mm_chr6_17803550_17804450
Length = 901
Score = 930 bits (481), Expect = 0.0
Identities = 496/505 (98%), Gaps = 8/505 (1%)
Strand = Plus / Minus
Query: 1 tgcatgcttttggtaaagatgctgaggggtgaatctcgggttgcatcctgatgaactctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgcatgcttttggtaaagatgctgaggggtgaatctcgggttgcatcctgatgaactctt 642
Query: 61 tttttttccattcttgacattaactctggagaagcctcatcttgaacttctggttcatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tttttttccattcttgacattaactctggagaagcctcatcttgaacttctggttcatat 582
Query: 121 tattctttctctaacactagtgacatcataatcatctccaggtcccaaaagcagttggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tattctttctctaacactagtgacatcataatcatctccaggtcccaaaagcagttggtt 522
Query: 181 ttagatggcaatataacacattccagatacgacaacagtacatgcagcagaaggaaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttagatggcaatataacacattccagatacgacaacagtacatgcagcagaaggaaaaac 462
Query: 241 taccctagtgt----gatattttgcactgacaagctaaacagctacaacaatagtcacga 296
||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct: 461 taccctagtgtgagagaca----gcactgacaagctaaacagctacaacaatagtcacga 406
Query: 297 aaatggcccctacaaagtatattagcaacttcttatcttaatcttttatttaattatgta 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aaatggcccctacaaagtatattagcaacttcttatcttaatcttttatttaattatgta 346
Query: 357 ttttggatatgtttccagaccagtgagaacatgcatatgcttaatcctcaataaaattac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttttggatatgtttccagaccagtgagaacatgcatatgcttaatcctcaataaaattac 286
Query: 417 tgtgtttgagaaaaatatgacacacctgttatggattaagtacatgtatgatactcggct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgtgtttgagaaaaatatgacacacctgttatggattaagtacatgtatgatactcggct 226
Query: 477 attaaaagatgttgagaccaaagtc 501
|||||||||||||||||||||||||
Sbjct: 225 attaaaagatgttgagaccaaagtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_l22.g1 MSMg01no428_l22.g1 CHROMAT_FILE:
MSMg01no428_l22.g1 PHD_FILE: MSMg01no428_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:01 2005
(526 letters)
>mm_chr6_17638999_17639924
Length = 926
Score = 847 bits (438), Expect = 0.0
Identities = 510/538 (94%), Gaps = 14/538 (2%)
Strand = Plus / Plus
Query: 1 caattccaatgactgttgctgattattgacttgtctatgataaactttgcatagaaactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattccaatgactgttgctgattattgacttgtctatgataaactttgcatagaaactg 260
Query: 61 atgcctttgttagaggtggggaaacaaatggtaacaaggacagctcatcatgacatttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 atgcctttgttagaggtggggaaacaaatggtaacaaggacagctcatcatgaaatttct 320
Query: 121 gggaatcactcatgcactgttcgacattacacatgtgtcagttacaaacacacattcttc 180
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 321 gggaatcactcatgcactgttcgacattacacatgtatcagttataaatacacattcttc 380
Query: 181 tttatgtacaggattgtgcactaagggtgttcttctccccaggcccatgctacccgaaaa 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tttatgtacaggattgtacactaagggtgttcttctccccaggcccatgctacctgaaaa 440
Query: 241 atcctttcggcttttcttggacagctgaaagttcttctctttaatactctatgaaagatg 300
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcctttcggctacacatggacagctgaaagttcttctctttaatactctatgaaagatg 500
Query: 301 aagttgccaggtggtggtggctcacgcctttaatcccagcacttgggaggcagaggcagg 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 aagttgccaggtggtggtggctcatgcctttaatcccagcacttgggaggcagaggcagg 560
Query: 361 cagatttctgaatttgaggccagcctggtctacaaagtgagttccaggacagccagggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagatttctgaatttgaggccagcctggtctacaaagtgagttccaggacagccagggct 620
Query: 421 acacaaagaaa-tcctgtttcaacccccc----cccaaagaaaac-aaacaaa--aaaaa 472
||||| ||||| || ||| |||||||||| |||||| ||||| ||||||| |||||
Sbjct: 621 acacagagaaactc-tgtctcaaccccccaccccccaaa-aaaaccaaacaaacaaaaaa 678
Query: 473 c---ccccccaaaaacaacaaacaaaaaaacaaatataaaaaa-aaaaaggaaagatg 526
| || |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 679 caaacctcccaaaaacaacaaacaaaaaaacaaatataaaaaataaaaaggaaagatg 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
