BAC Information

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BAC

Clone NameMSMg01-429E20
Chromosome6 (Build37)
Map Location 39,399,803 - 39,585,200
singlet/doubletdoublet
Overlap geneDennd2a, Adck2, Ndufb2, Braf
Upstream geneD130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601
Downstream geneFth-ps2, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429E20.T7 (MSMg01no429_e20.b1)MSMg01-429E20.TJ (MSMg01no429_e20.g1)
ACCAG522063AG522064
length722755
length of high quality
(start - end)
521 (57 - 577)374 (73 - 446)
definitionCHROMAT_FILE: MSMg01no429_e20.b1 PHD_FILE: MSMg01no429_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:44 2005CHROMAT_FILE: MSMg01no429_e20.g1 PHD_FILE: MSMg01no429_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,584,704 - 39,585,200)(39,399,803 - 39,400,176)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTTGAGTTGTCTTTTGCAAAAAACTATTATACAAAATTCTGTTTTGCTG
GTTGCACATATAGTCTATAACCCCTATCACTTGGGAGCTGGAGACGGGAA
ACTGAGTCCAAACCAGCTTGGAATTTATGGTCACTTGCCTCAAAACAACA
GCATGCTATTTGGTTTAATATTAATTAAGCCTGTCTCTGCCCTATTAGTG
CTGGGCTTAAAGGTATGCAATACAACACCCCTGACCCGTATTTGTTTTAT
AAAAGTGTTGTATATGTGAATACGGGAACGGGAATCACCGGGTTTACTAG
TGGGTGTCTCCAGCAAGGAAAATAGAGACTTAGTATAAACTTTAAAAACT
GCGAAAGCTAACGTGTAAAACTCTTAACAGCATTTGTTAGGGTAGGAATA
GGAGTAATTGTACTCTATCTTTTGGGATGCTGGGTCTTAATTATCACTTA
CTACAAAGTAATAGAAAATCATGTGAAAAAATGTAAACACAAATACATGC
CAGTAACTTACCATCCAGATAACTGTATTTGATGGCTTAAGGCGTGTTTT
GTATCCTTCATAAATGTGGATGTTAATGCTGTACATAATGCGTTTGTTTC
CATTTGGAACTATAAAGACAGGCTTTGCCTTCCCTTTACTCCTTGCACAC
CATCCCTGGGTAGTTAAGATTA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAGAGGATACAGTTGAGTGGCAAGGA
CAGTGTGCTTTTAAACAGTCACACGGCAACTAGAACAACAGTGGGGAAAG
GATGGCGGCTTCTGATGCAAAGGATGGCTGATTACTTCCAGGCTCTAGAA
TGCTGCCATAAACCAATACAGGTCATCAAGCAGGGAGACTTTGCTCCACA
GGGTCTGGAAAGCAGAAGGCTTTGATCCCCAGAGCATATGCAGCTGAGAT
GGGCAGGGTCCTGCTGGGACTGGACCCTAAGTTCCATTGTCTCTGAGAAG
TTATTTCTCTTCTGGTGAAATGAGCCCATTCAAATCAGATTAGATTATAA
TAAATGTAGGTTTATTGGGAAGCTGCTCTCAGCTGCGTGAGTTCACTGGC
CCTGAAGACTGAGGCAAGGGACATTGCCCTGGCGAAGGGAGAGGCTACAA
ATAAATACCTTTGACCTCCCACCCACGCCCACCCCCCCACCCCTTCTTTT
ATTTTTTTCCCCCCCCTTCCCTTCCTTTCTTTCCTTTTTTTTTTCCCCCC
CCCCCCCTTTTTTTCCTTTTCCCCTCCCCCCTCTCTTTTTCTTCTTTTCC
CCCTCCCCCATCTTTTATTTCTTGCTTCTTGTTCCCCCTTCTCCCCCTTC
CCCCCTCCTCTTTACCCTCTCCTCACCTCCCTCCCTTTCCCTCCCCCCCC
TCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_e20.b1 MSMg01no429_e20.b1 CHROMAT_FILE:
MSMg01no429_e20.b1 PHD_FILE: MSMg01no429_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:44 2005
         (521 letters)



>mm_chr6_39584280_39585200
          Length = 921

 Score =  915 bits (473), Expect = 0.0
 Identities = 491/497 (98%)
 Strand = Plus / Minus

                                                                       
Query: 25  tacaaaattctgttttgctggttgcacatatagtctataacccctatcacttgggagctg 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 tacaaaattctgttttgctggttgcacatatagtctataacccctatcacttgggagctg 862

                                                                       
Query: 85  gagacgggaaactgagtccaaaccagcttggaatttatggtcacttgcctcaaaacaaca 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gagacgggaaactgagtccaaaccagcttggaatttatggtcacttgcctcaaaacaaca 802

                                                                       
Query: 145 gcatgctatttggtttaatattaattaagcctgtctctgccctattagtgctgggcttaa 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcatgctatttggtttaatattaattaagcctgtctctgccctattagtgctgggcttaa 742

                                                                       
Query: 205 aggtatgcaatacaacacccctgacccgtatttgttttataaaagtgttgtatatgtgaa 264
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggcatgcaatacaacacccctgacccgtatttgttttataaaagtgttgtatatgtgaa 682

                                                                       
Query: 265 tacgggaacgggaatcaccgggtttactagtgggtgtctccagcaaggaaaatagagact 324
           || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 tatgggaacgggaatcaccgggtttactagtggttgtctccagcaaggaaaatagagact 622

                                                                       
Query: 325 tagtataaactttaaaaactgcgaaagctaacgtgtaaaactcttaacagcatttgttag 384
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 tagtataaactttaaaaactgcgaaagctaacgtgtaaaactcttaacggcatttgttag 562

                                                                       
Query: 385 ggtaggaataggagtaattgtactctatcttttgggatgctgggtcttaattatcactta 444
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 ggtaggaataggagtaattgtactctatcttttgggatgctgtgtcttaattatcactta 502

                                                                       
Query: 445 ctacaaagtaatagaaaatcatgtgaaaaaatgtaaacacaaatacatgccagtaactta 504
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctacaaagtaatagaaaatcatttgaaaaaatgtaaacacaaatacatgccagtaactta 442

                            
Query: 505 ccatccagataactgta 521
           |||||||||||||||||
Sbjct: 441 ccatccagataactgta 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no429_e20.g1 MSMg01no429_e20.g1 CHROMAT_FILE:
MSMg01no429_e20.g1 PHD_FILE: MSMg01no429_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:44 2005
         (374 letters)



>mm_chr6_39399603_39400376
          Length = 774

 Score =  654 bits (338), Expect = 0.0
 Identities = 365/374 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagaggatacagttgagtggcaaggacagtgtgcttttaaacagtcacacggcaacta 60
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct: 201 cagagaggatacagttgagtggcaagtacagtgtgcttttaaacagtcacacagcaacga 260

                                                                       
Query: 61  gaacaacagtggggaaaggatggcggcttctgatgcaaaggatggctgattacttccagg 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcaacagtggggaaaggatggcggcttctgatgcaaaggatggctgattacttccagg 320

                                                                       
Query: 121 ctctagaatgctgccataaaccaatacaggtcatcaagcagggagactttgctccacagg 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctagaacgctgccataaaccaatacaggtcatcaagcagggagactttgctccacagg 380

                                                                       
Query: 181 gtctggaaagcagaaggctttgatccccagagcatatgcagctgagatgggcagggtcct 240
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gtctggaaggcagaaggctttgatccccagagcatatgcagctgagatgggcagggtctt 440

                                                                       
Query: 241 gctgggactggaccctaagttccattgtctctgagaagttatttctcttctggtgaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgggactggaccctaagttccattgtctctgagaagttatttctcttctggtgaaatg 500

                                                                       
Query: 301 agcccattcaaatcagattagattataataaatgtaggtttattgggaagctgctctcag 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccaattcaaatcagattagattataataaatgtaggtttattgggaagctgctctcag 560

                         
Query: 361 ctgcgtgagttcac 374
           ||| ||||||||||
Sbjct: 561 ctgggtgagttcac 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)