BAC Information

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BAC

Clone NameMSMg01-429I03
Chromosome6 (Build37)
Map Location 83,217,470 - 83,217,910
singlet/doubletsinglet
Overlap geneC330016K18Rik
Upstream geneTacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1
Downstream geneMthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429I03.T7 (MSMg01no429_i03.b1)MSMg01-429I03.TJ (MSMg01no429_i03.g1)
ACCAG522219AG522220
length736733
length of high quality
(start - end)
441 (42 - 482)202 (68 - 269)
definitionCHROMAT_FILE: MSMg01no429_i03.b1 PHD_FILE: MSMg01no429_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:01 2005CHROMAT_FILE: MSMg01no429_i03.g1 PHD_FILE: MSMg01no429_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAC
ACATGGGAACCCCAGAACAAGCTAGAACAAGACTACCTAAATCTGTCTGC
AGCATTGGGTTCACTGAGAGATTCTGCCTCAGTGAATAAGGTGGAGAGCA
AAGAAAAATTCCCTGGTGCCACCGTTAGGGCCTCTACATATGCACCCACA
CATATTCAGACGTGAACGCACATTGCACATACCACAGAAAGACAGAAAAT
GATTCAGTAATATGCATCCCCCTACACAGTCCCCACTCCTGACTTTAGAG
CTGTTCATAAGTGGCCGTGTTGGCTTCTGATTTGCTACAGGGAGAAGAAA
ATGCCGGATGTGGAGTACCCTCTGCTGCTCTTATCCCGAACACACACCTC
TTGTCAGCTGAGGGAACTTTCTTGGGTGGCTCAATTCTGATGTTTGGGTC
CCACTCTCCAGGGGGAAGGACAATGACCTCGTCTAGAAATTCATCCAACC
CCTGCGAGTAGGATTCTTCCCGTTTCCAAATCTTTAAAACCCCCCTTCCC
CTTAAAAACCCCCGGTCCGNGGCTCTGGTAGAAGCGATTAAACGGTCCAA
GCGGAAAAAGGGGCTCCTCCCTCCCCCCCCCGGGGAAGAGGACCCCCCCC
CCCCCTTCTTTTTTCTAGAACGGACAACACTCCCGAACTCCCTCCCCTCT
TTACACCCTCCCCCTCCTCTCCCCCCTTCGCCGTGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGCGAAGGACATGGCTACAGCTCAGCTACAGAG
AGATCGATCTCAGAGGACTTGGGGTTGAATACGATCAAAATACAAATTAT
GAAATTTTCAAAAACAATTTTTATATAAAATTTAAGTCAATCAGATAGCA
GAACAGCAGCTTGTGTCCTTCAGTCCCACCCCGAGTTTAAAAAGTGGTGG
TGGTGGTGGTGGTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT
TTTTTTTTTTTTTTTTGGGGGGGGGGTTTTTTTTTGTTTGTTTTTTTTTT
GGNTTCCTTTTTTGGTTNNNGTTTTTGTGTTTTTTTGGTGTTTGGTTGGT
TTTTTTGTTTGTTGTGTTTTGTTTTTTTGGTGTTTTTTTGGGTGTTGGTG
TTTTNGGNTTTTTTTGGTGTTTTTGTTGTTTTGTTTTTTGTGTGTTTTTT
GGGTGTTTTGTTTTTTGTTGGTTTTGTTTTTTTTTTTTTTTTTGTTGGTG
GTGTTTTTTTNTGGNGTTTTTTGTTTTTTTTTTTTGTTTTGGTGGGGTTT
GGGGGTTTGTTTTGGTTTGTGGTTGGGGGTGTTTTGTTTTNGTTTGTGTT
TTGTNTGTTGGTGGTGGTTTGGGGTGGTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_i03.b1 MSMg01no429_i03.b1 CHROMAT_FILE:
MSMg01no429_i03.b1 PHD_FILE: MSMg01no429_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:01 2005
         (441 letters)



>mm_chr6_83217107_83217947
          Length = 841

 Score =  830 bits (429), Expect = 0.0
 Identities = 438/441 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattccaacacatgggaaccccagaacaagctagaacaagactacctaaatctgtctgca 60
           |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 804 aattccaacacaggggaaccccagaacaagctagaacaagactatctaaatctgtctgca 745

                                                                       
Query: 61  gcattgggttcactgagagattctgcctcagtgaataaggtggagagcaaagaaaaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcattgggttcactgagagattctgcctcagtgaataaggtggagagcaaagaaaaattc 685

                                                                       
Query: 121 cctggtgccaccgttagggcctctacatatgcacccacacatattcagacgtgaacgcac 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctggtgccaccgtcagggcctctacatatgcacccacacatattcagacgtgaacgcac 625

                                                                       
Query: 181 attgcacataccacagaaagacagaaaatgattcagtaatatgcatccccctacacagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attgcacataccacagaaagacagaaaatgattcagtaatatgcatccccctacacagtc 565

                                                                       
Query: 241 cccactcctgactttagagctgttcataagtggccgtgttggcttctgatttgctacagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cccactcctgactttagagctgttcataagtggccgtgttggcttctgatttgctacagg 505

                                                                       
Query: 301 gagaagaaaatgccggatgtggagtaccctctgctgctcttatcccgaacacacacctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagaagaaaatgccggatgtggagtaccctctgctgctcttatcccgaacacacacctct 445

                                                                       
Query: 361 tgtcagctgagggaactttcttgggtggctcaattctgatgtttgggtcccactctccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtcagctgagggaactttcttgggtggctcaattctgatgtttgggtcccactctccag 385

                                
Query: 421 ggggaaggacaatgacctcgt 441
           |||||||||||||||||||||
Sbjct: 384 ggggaaggacaatgacctcgt 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)