Query= MSMg01no429_l06.b1 MSMg01no429_l06.b1 CHROMAT_FILE:
MSMg01no429_l06.b1 PHD_FILE: MSMg01no429_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:16 2005
(559 letters)
>mm_chr6_86908501_86909459
Length = 959
Score = 1036 bits (536), Expect = 0.0
Identities = 550/556 (98%), Gaps = 3/556 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttctgtatgggagattccctcacttacttgtgttcactcctggtctcggatca 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttctgcatgggagattccctcacttacttgtgttcactcctggtctcggatca 263
Query: 64 cttgagttaaatctggtagcttccctgggactgtgcctggaaagcagtctggtgcagtgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttgagttaaatctggtagcttccctgggactgtgcctggaaagcagtctggtgcagtgg 323
Query: 124 gaagggccagcagtgcaaatgttgcccaattctcatgcctcgagtcctgtcctgaactcc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 gaagggccagcagtgcaaatgttgcccaattctcatgcctcgagtcctgtcctgaattcc 383
Query: 184 tttgcccaacaactgtgcttttgctgggccttccctttggcttcccatcatttttatagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttgcccaacaactgtgcttttgctgggccttccctttggcttcccatcatttttatagt 443
Query: 244 tattgaaacattagtatttgtgaatgtggctctgtgataggcttgtgttcactccctcat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tattgaaacattagtatttgtgaatgtggctctgtgataggcttgtgttcactccctcat 503
Query: 304 ttctcactactctcctgtgcagtttcaggcagtacatccagcagcccagcaaccagtcac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttctcactactctcctgtgcagtttcaggcagtacatccagcagcccagcaaccagtcac 563
Query: 364 tgctcagttccctgtggggtcccagggaggtgctcagcaacagctgatgcagaacttcta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgctcagttccctgtggggtcccagggaggtgctcagcaacagctgatgcagaacttcta 623
Query: 424 ccaccagcagcaacagcagcagcagcagcagcagcagcagctgatggctcagcaggctgc 483
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 624 ccaccagcagcaacagcagcagcagcagcagcagcagc---tgatggctcagcaggctgc 680
Query: 484 cctgcagcagaagactgctgtggtagtaccacagtctcaggcacagcccgccacagcccc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgcagcagaagactgctgtggtagtaccacagtctcaggcacagcccgccacagcccc 740
Query: 544 acaggcagccgctgcc 559
||||||||| ||||||
Sbjct: 741 acaggcagctgctgcc 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_l06.g1 MSMg01no429_l06.g1 CHROMAT_FILE:
MSMg01no429_l06.g1 PHD_FILE: MSMg01no429_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:16 2005
(403 letters)
>mm_chr6_87101912_87102711
Length = 800
Score = 748 bits (387), Expect = 0.0
Identities = 398/403 (98%), Gaps = 3/403 (0%)
Strand = Plus / Minus
Query: 1 actccagggctggtctccgagaaaggccctatgaggcccagctctatcgctagccattgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 actccagggctggtctccgagaaaggccctatgaggcccagctctatcgctagccattgt 541
Query: 61 gagtcagagacccgtggaaggccgatcacttgaaggctgcggagttgaccatcaaggcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gagtcagagacccgtggaaggccgatcacttgaaggctgcggagttgaccatcaaggcag 481
Query: 121 gagtacacacaggccactcttgtcccacagctctcctcagttcattggaagaggaaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gagtacacacaggccactcttgtcccacagctctcctcagttcattggaagaggaaagtg 421
Query: 181 tgggagtcacagcagcgagcagaaaacatgggaaagtagagaagaagtgagtagagtagc 240
||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 420 tgggagtcacagcagtgagcagaaaacatgggaaagcagagaag---tgagtagagtagc 364
Query: 241 cagagcctggttaggcacccaaaatggcgtttgccctgctggtaaggcattgtacaatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cagagcctggttaggcacccaaaatggcgtttgccctgctggtaaggcattgtacaatca 304
Query: 301 ggagggaccaggcgatgccacccatttaggcacattcatttaaagtatcccgtctcaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ggagggaccaggcgatgccacccatttaggcacattcatttaaagtatcccgtctcaaaa 244
Query: 361 ttgtgttcaggcctccagtaggctccagtgtccttccttatta 403
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttgtgttcaggcctccagtaggctccagtgtccttccttatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 800
Length adjustment: 9
Effective length of query: 394
Effective length of database: 791
Effective search space: 311654
Effective search space used: 311654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
