Query= MSMg01no429_o08.b1 MSMg01no429_o08.b1 CHROMAT_FILE:
MSMg01no429_o08.b1 PHD_FILE: MSMg01no429_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:31 2005
(547 letters)
>mm_chr6_80465436_80466382
Length = 947
Score = 1029 bits (532), Expect = 0.0
Identities = 541/544 (99%)
Strand = Plus / Plus
Query: 4 ggaattctatatctcctatcctgacctttcttgtagaccactacttaatccagagtcagt 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctatatcccctatcctgacctttcttgtagaccactacttaatccagagtcagt 263
Query: 64 ctgcaggcaaaaacctgtttgttgaggtacagggcgatattttgcctgatctttggctaa 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgcaggcaaaaacttgtttgttgaggtacagggcgatattttgcctgatctttggctaa 323
Query: 124 aagctgtttggctaattggggataaattaaaactgatttctttttttacttgaaatagag 183
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagctgtttggctaattgggaataaattaaaactgatttctttttttacttgaaatagag 383
Query: 184 aagttagtgtctattagtcattattctaacaagaatctgtcatggttttaagatgaagga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagttagtgtctattagtcattattctaacaagaatctgtcatggttttaagatgaagga 443
Query: 244 tgtctgcaggaggaattttgccagattattggatcattagactggtcccaattcatcatc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtctgcaggaggaattttgccagattattggatcattagactggtcccaattcatcatc 503
Query: 304 cttcatagagcttggctgtaatctgcacatttatatgataatattctagttgtgataaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttcatagagcttggctgtaatctgcacatttatatgataatattctagttgtgataaaa 563
Query: 364 tgttcttgtattatattcttttgagtaaaactgtatagacttaactctttctgtctctcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgttcttgtattatattcttttgagtaaaactgtatagacttaactctttctgtctctcc 623
Query: 424 acataggaaatatcactgtggattataacttgattttttgacaggtgtataaggcataaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acataggaaatatcactgtggattataacttgattttttgacaggtgtataaggcataaa 683
Query: 484 tttgatgataaggccattaatttatgcagtttgaaatccctgtataaatacttgaatccc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttgatgataaggccattaatttatgcagtttgaaatccctgtataaatacttgaatccc 743
Query: 544 cttg 547
||||
Sbjct: 744 cttg 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_o08.g1 MSMg01no429_o08.g1 CHROMAT_FILE:
MSMg01no429_o08.g1 PHD_FILE: MSMg01no429_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:31 2005
(394 letters)
>mm_chr6_80694498_80695291
Length = 794
Score = 536 bits (277), Expect = e-156
Identities = 365/405 (90%), Gaps = 20/405 (4%)
Strand = Plus / Minus
Query: 1 tacctcttttggagattaggcaccctggagacccaagaaatagtgcacgggtgatagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tacctcttttggagattaggcaccctggagacccaagaaatagtgcacgggtgatagcta 725
Query: 61 ctacat--caggagctagtcatattctaaacttgagtcttatgttgaggaaaccctttca 118
|| || |||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 724 ct--atgacaggagctagtcatattcaaaacttgagtcttatcttgaggaaaccctttca 667
Query: 119 tcc--------atccatc--------catccatccatccatccatccatccatccatcca 162
||| ||||||| ||| ||| ||| ||| ||| ||| ||| ||| ||
Sbjct: 666 tccatctatttatccatctatttatacatacatacatacatacatacatacatacataca 607
Query: 163 tccatccatccatccatccttatgatattagctttaatttttaaattcagacaatgtaca 222
| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tacatacatacatacatccttatgatattagctttaatttttaaattcagacaatgtaca 547
Query: 223 atcaccaaagaagagaatcttaatgagggattgggtgcactaacgttggactctgaagaa 282
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 546 atcaccaaagaagagaatcttaatgagggattgggtgcactaaagttggactctgaagaa 487
Query: 283 ttgtcttccttatgttgattgatatgggcagtgacattgaatagacagagcacttaagaa 342
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgtcttgcttatgttgattgatatgggcagtgacattgaatagacagagcacttaagaa 427
Query: 343 aggaaaatagaactaaacttaaggaaagaagcaagtgtaaaagca 387
| ||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 426 aagaaaatagaactaaacttaaggaaaaaagtaagtgtagaagca 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
