Query= MSMg01no429_p15.b1 MSMg01no429_p15.b1 CHROMAT_FILE:
MSMg01no429_p15.b1 PHD_FILE: MSMg01no429_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:36 2005
(487 letters)
>mm_chr6_117822267_117823152
Length = 886
Score = 893 bits (462), Expect = 0.0
Identities = 480/487 (98%), Gaps = 1/487 (0%)
Strand = Plus / Plus
Query: 1 ggaaagaaatagttaagggttattccgatatagcccctcacagaagaaatcaatccgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaagaaatagttaagggttattccgatatagcccctcacagaagaaatcaatccgagt 260
Query: 61 actcagcacattttatgttatacagtgaatgggttactctggtttctcatatgggtagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcagcacattttatgttatacagtgaatgggttactctggtttctcatatgggtagag 320
Query: 121 tgtataatgcaattctgccagtgttgttagaattatattctacattttttaactgcaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtataatgcaattctgccagtgttgttagaattatattctacattttttaactgcaaga 380
Query: 181 actctgtatttttccaagcacagcatggttcccttcattcatattctctgagaaattgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actctgtatttttccaagcacagcatggttcccttcattcatattctctgagaaattgga 440
Query: 241 attcatgtttcctctgaaattatgtgccttgtttttcatattccatttaagtcctaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcatgtttcctctgaaattatgtgccttgtttttcatattccatttaagtcctaaata 500
Query: 301 gctctctttaaactgtgaccgtccaatgtgttcatttgagggtggggtgggggagctgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctctctttaaactgtgaccgtccaatgtgttcatttgagggtggggtgggggagctgga 560
Query: 361 ggtataacgggcatggtgatctgttgtgtttagtanaaaaatgtgnatcagtttgnactc 420
||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| ||||
Sbjct: 561 ggtataacgggcatggtgacctgttgtgtttagtacaaaaatgtgcatcagtttgcactc 620
Query: 421 acactacaggaagtgcttccccacatactactgtggtggaaagtccactcagcccctcct 480
||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 621 acactacaggaagtgct-ccccacatactactatggtggaaagtccactcagtccctcct 679
Query: 481 ctctggc 487
|||||||
Sbjct: 680 ctctggc 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space: 417852
Effective search space used: 417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_p15.g1 MSMg01no429_p15.g1 CHROMAT_FILE:
MSMg01no429_p15.g1 PHD_FILE: MSMg01no429_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:37 2005
(421 letters)
>mm_chr6_117858196_117859020
Length = 825
Score = 743 bits (384), Expect = 0.0
Identities = 413/425 (97%), Gaps = 4/425 (0%)
Strand = Plus / Minus
Query: 1 tcctccgtggctacataatgatttataactt----aaaaaaaaaaaggctggtaaaacta 56
||||| |||||||||||||||||| |||||| |||||||||||||||||||| ||||
Sbjct: 625 tcctctgtggctacataatgatttgtaacttaaaaaaaaaaaaaaaggctggtaagacta 566
Query: 57 atggcaacacgagggagataagaaaagcagaaagttcaaaatttaagtcaggatttggtc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atggcaacacgagggagataagaaaagcagaaagttcaaaatttaagtcaggatttggtc 506
Query: 117 tgtaagactgttctcaactgagatctgcctccgagcgctgagcgcaaaggcatgcatagc 176
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 505 tgtaagactgttctcaactgagatctacctccgagcgctgagcgcaaaagcatgcatagc 446
Query: 177 cacccggcgtactcaaaagtacttcgacattgttcaatgggctaacgcactttttgccag 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacccggcgtactcaaaagtacttcgacattgttcaatgggctaacgcactttttgccag 386
Query: 237 accttagctacctgcgctcagtctgaatacacagatggaagaactgaaccacgttttgac 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accttagctacctgcgctcagtctgaatacacagatggaagaactgaaccacgttttgac 326
Query: 297 ctccactccgcagcacgaagggaagaaagacttaagtattaactatttcaagatatcgtc 356
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 ctccactccgcagcacgaagggaagaaagacttaagtattaactatttccagatatcgtc 266
Query: 357 tgtcttgttcaactagaagacttanatatttaaaccaccccctggacagagcgatagatc 416
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtcttgttcaactagaagaattaaatatttaaaccaccccctggacagagcgatagatc 206
Query: 417 attgt 421
|||||
Sbjct: 205 attgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 825
Length adjustment: 9
Effective length of query: 412
Effective length of database: 816
Effective search space: 336192
Effective search space used: 336192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
