BAC Information

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BAC

Clone NameMSMg01-430A16
Chromosome6 (Build37)
Map Location 117,929,172 - 117,929,394
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4
Downstream geneLOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430A16.T7 (MSMg01no430_a16.b1)MSMg01-430A16.TJ (MSMg01no430_a16.g1)
ACCAG522628AG522629
length758803
length of high quality
(start - end)
430 (51 - 480)232 (79 - 310)
definitionCHROMAT_FILE: MSMg01no430_a16.b1 PHD_FILE: MSMg01no430_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:42 2005CHROMAT_FILE: MSMg01no430_a16.g1 PHD_FILE: MSMg01no430_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTAAGTCTAGAGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGGACTGCCAGGGCTATACAGAGAAACCCTGTCTCGGAA
AAAAAATGTATATATATATATATATATATATATATATATATATACACACA
CACACACACACACACACACACATATATATATAATGTGTATGTGAACACAC
ACAGACATATAGTATGTATATTGTTTGAATGAAGTTATTCCACTTGGGGT
GATAATGGTACCCCCAAGAGCCATAGACTATCTAGCCCAAGTCCCAGTGC
CAGGCATGGGAAACCTCCCTTCAAGTTGTTGGCCAGTGGAGTCAAAGAGA
CGCTCAAAATAGCACAGGTTTTTGCCATTGCTCTTAATTTGACATTCAGA
CACTATTTCAGAGAACGCCTCAAACTTCCAACTCAGGACTTAGAGGACTC
AAGCTGGAACTAATCTGCAAGCCTCCTCCATGAGGACTAGATCTTATAGT
ACCATAAGGCTCTACAGAAGCTGCCAAAGGATAAAAGAAATGGTTAGTTC
TACCCCACTGCAAAATCTAACAACTACAGCCAGTGATCTTCATGGCAAGA
CGCCCTCAAGAACCTCCGCGTGGCGGATCTACTCTTTTAATTCTATCTCT
CTTCTATCCAATTTTCCATTTTTCTCTTTTTCTCTCTTCTCCTCTTTCTC
CTTCTTACCCTTTTCTTCTTATTTTTCTTATCTTTTTACCCTTACCTCTC
TACCTATN
CCTTCGATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATGCCTCAGACCTATGGGGT
TAGCACGGTCTTCCCCAGGTCCAAGCACGGATGTTGACAGCGTGTGCAGG
AAGTATCAGTCCCAGTGTCCAGGTGTACATCTCCAAGATGGCTACAGCCT
GATACTGCTTCCCTACCAAGAGTCGCTCACTGGCCTCCTCATCCGGCCGT
ATATAATAGTGTGCTGAGTCTCCAGTTCATGCTGCTGCTGCTGCTGCTGC
TCCATCTGAGCACATGGCTCACTGTTTCCCAGCTTTATATCACCTGTGAC
TGTCTTTTCTTCATTCCCTGTCTCCTTTTGTTTCCATCTATTTCTTTGTA
CTGTTGTATATAACTAATTTCGTCCCTTGCCTTGTTGTTTCCACTTGTCA
CTTTTGTTTTTCTTTTTTCTACCTCTTCTTCTTTTTTTCTTCTTTTATAA
TCCATTTCTCTCATCTCCTTTACTTCATGATTTTCGCTATTCTTCCATTT
CATCTATTTCTCTCTTCCTCAATTACCACCCACATTCTCCCCCTTTTTTC
TCTCCCCCTTTCCCCTTTCTCCTTATTATCCTCCCTTTTCTCCATCTTCT
CCCTTCCCCCCTCCCATTTTTTCATTCTCATACCCCCTCCCCCCCTTTTT
TTCCTATAATCCTTCCCCCTATCTTTCTTTCTCTCTTATACTTTCCAATT
ATACCCTATATTAAACCCCCTCATATCCATCCTAATTTCCGCACACCTCT
TAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_a16.g1 MSMg01no430_a16.g1 CHROMAT_FILE:
MSMg01no430_a16.g1 PHD_FILE: MSMg01no430_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:42 2005
         (232 letters)



>mm_chr6_117928994_117929625
          Length = 632

 Score =  408 bits (211), Expect = e-118
 Identities = 220/223 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgcctcagacctatggggttagcacggtcttccccaggtccaagcacggatgttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 taatgcctcagacctatggggttagcacggtcttccccaggtccaagcacggatgttgac 342

                                                                       
Query: 61  agcgtgtgcaggaagtatcagtcccagtgtccaggtgtacatctccaagatggctacagc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 341 agcgtgtgcaggaagtatcagtcccagtgtccaagtgtacatctccaagatggctacagc 282

                                                                       
Query: 121 ctgatactgcttccctaccaagagtcgctcactggcctcctcatccggccgtatataata 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctgagactgcttccctaccaagagtcgctcactggcctcctcatccggccgtatataata 222

                                                      
Query: 181 gtgtgctgagtctccagttcatgctgctgctgctgctgctgct 223
           ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 221 gtgtgctgagtctccagttcaggctgctgctgctgctgctgct 179


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)