BAC Information

Click to search

BAC

Clone NameMSMg01-430A24
Chromosome6 (Build37)
Map Location 95,672,748 - 95,865,689
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912, Suclg2
Downstream geneLOC665886, LOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik, C130034I18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430A24.T7 (MSMg01no430_a24.b1)MSMg01-430A24.TJ (MSMg01no430_a24.g1)
ACCAG522644AG522645
length815841
length of high quality
(start - end)		363 (72 - 434)263 (77 - 339)
definitionCHROMAT_FILE: MSMg01no430_a24.b1 PHD_FILE: MSMg01no430_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:44 2005CHROMAT_FILE: MSMg01no430_a24.g1 PHD_FILE: MSMg01no430_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,672,748 - 95,673,110)(95,865,429 - 95,865,689)
sequence
NTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCAAGGCTACTTTTCCCACTGAGTACTTCGTAAAGATAAATAAGA
CCCTCAGGACAGCCAGAGATAGAGCAGTACTTCTCTAACAAATAGAAACA
AAACAAAAAGTGCCCTCCTAGAAGGGAATATTTGGAGGTGAGAGGGAAGC
ATTCTGATTGGTATTTTTATGCTCTAGGAGCTTGGTGAACTGGCTTACCA
TCCGCTGGTGCGTAGCTGGAGGTTCGAAGGCAAGATGGTGGCCTTACTTA
GATGAGTTCAGTTTCAGTTGGGAGACTGGCCCTTATCTATGGGACTCACT
CCATCATTTATCAGCAGTTTCTCCACACCTTTACCCACATTCTCCCAAAT
CACCATCTAGGCCACAAGGGGTGGCAGAAGGAAGACAAAGCTAACCATTC
TTAGGGTATCTCCCCATGTGCGATGTAATGGACCGCGCTCATTGCACGCC
CTGGATAGACTTCCCCTTGGTCTATCTCCCCCTTTGTTTCGTCCTGTTTT
TTCCCCCCCTTTCTTTTCCTGCCTTTCCCTTGTCATGTCGACCATTTCTT
CATTCCCTTATCTCCCATTTTTTTTTCCCATTTCTCTCCTCTTTTTCTTC
TTCCTTCCTATACCCTCTATTTTTTACTATCTCCCATCTTACTTGAACTC
TTTGCTCTTCCCTTCTCATTATCCTTTAATTCCCTACCTTCCTTCCCTTT
CACTCCTTTACCCCTTCTCCTCTCTCCTTCTTCCTTTTTTGTTTCCCTTT
ACTCTCTCTTTCTTT

CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCGACCCCTCATCACCTCCTCTTGC
ACTTCTATGTGACCTTGAATAGTTTATTTAGCCTGCTTGCACATCCATGT
TGCCCTGGCCTGTGAAAAGGTCCTCAAACAGCTGCCACCTCACGCATCTG
CAGAGAACAACACTGATTGGTGGTTGGGTCTTTGCAGAGCACTGCTGGTG
TGTCTTTGGCTTCTGCTTACCCCAAGTGTGAGCATAGGGAAGTCATACTT
CTATCTCTCGCTGGAGGCTTTGATGTTTATTTTTCCAGCCCTGGGATCTA
TTCACTTCCCAAGAAGTACTTTGCTGACCTCCCTGCACGAAACAGTAAAT
TCTCCACCACTGGGTAATAATCTAGCCATGTGTGCTGCTTTTATTTCCTG
TGCCCCTTCGTATGCCTTTTATCCCTCTCTCACTTCCTTTCTCTTTTCCA
ACTGATTCACTTTTATCCATTCTTTCGAACATTATTTTTCCATCCTTCCC
TAATACCTCCTCTACATTTCACTACATTCACCACTTATCAATATTATCTC
TATTATCATTTATCTTCCTCCCTAATTACGACCCCCTTATAATTCCCTCC
ATCATCTTTCTTTCCCCATATTTTACCCCCCCTCTTCTTCATCTTCCCCT
ACCCCCCCTCCTTCTTTTAAATTCCCATCACCCTTACTCTCATCTCACCT
ATAATTAATCCCTAACTAAGTATACGTCTCATTGCCCCAATTAACCCAAA
TTTACTCACTCACTTATCAACCATAAATCCCACACTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_a24.b1 MSMg01no430_a24.b1 CHROMAT_FILE:
MSMg01no430_a24.b1 PHD_FILE: MSMg01no430_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:44 2005
         (363 letters)



>mm_chr6_95672548_95673310
          Length = 763

 Score =  671 bits (347), Expect = 0.0
 Identities = 359/363 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgagtacttcgtaaagataaataagaccctcaggacagccagagatagagcagtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgagtacttcgtaaagataaataagaccctcaggacagccagagatagagcagtact 260

                                                                       
Query: 61  tctctaacaaatagaaacaaaacaaaaagtgccctcctagaagggaatatttggaggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctaacaaatagaaacaaaacaaaaagtgccctcctagaagggaatatttggaggtga 320

                                                                       
Query: 121 gagggaagcattctgattggtatttttatgctctaggagcttggtgaactggcttaccat 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gagggaagcattctgattggtatttttatgctctaggagcttggtaaactggcttaccat 380

                                                                       
Query: 181 ccgctggtgcgtagctggaggttcgaaggcaagatggtggccttacttagatgagttcag 240
           || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccactggtgcgtagctgtaggttcgaaggcaagatggtggccttacttagatgagttcag 440

                                                                       
Query: 241 tttcagttgggagactggcccttatctatgggactcactccatcatttatcagcagtttc 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcagttgggagactggccctcatctatgggactcactccatcatttatcagcagtttc 500

                                                                       
Query: 301 tccacacctttacccacattctcccaaatcaccatctaggccacaaggggtggcagaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccacacctttacccacattctcccaaatcaccatctaggccacaaggggtggcagaagg 560

              
Query: 361 aag 363
           |||
Sbjct: 561 aag 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no430_a24.g1 MSMg01no430_a24.g1 CHROMAT_FILE:
MSMg01no430_a24.g1 PHD_FILE: MSMg01no430_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:44 2005
         (263 letters)



>mm_chr6_95865227_95865889
          Length = 663

 Score =  458 bits (237), Expect = e-133
 Identities = 255/261 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   acccctcatcacctcctcttgcacttctatgtgaccttgaatagtttatttagcctgctt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 acccctcatcacctcctcttgcacttctatgtgaccttgaatagtttatttagcctgctt 404

                                                                       
Query: 63  gcacatccatgttgccctggcctgtgaaaaggtcctcaaacagctgccacctcacgcatc 122
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 403 gcacatccacgttgccctggcctgtgaaaaggtcctcaaaccgctgccacctcacgcatc 344

                                                                       
Query: 123 tgcagagaacaacactgattggtggttgggtctttgcagagcactgctggtgtgtctttg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 343 tgcagagaacaacactgattggtggttgggtctttgcagagcactgctggtttgtctttg 284

                                                                       
Query: 183 gcttctgcttaccccaagtgtgagcatagggaagtcatacttctatctctcgctggaggc 242
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 283 gcttctgcttaccccaagtgtgagcatagggaagtcatacttctacctctcgctggaggc 224

                                
Query: 243 tttgatgtttatttttccagc 263
           ||||||||||| ||| |||||
Sbjct: 223 tttgatgtttactttaccagc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |