Query= MSMg01no431_b11.b1 MSMg01no431_b11.b1 CHROMAT_FILE:
MSMg01no431_b11.b1 PHD_FILE: MSMg01no431_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:15 2005
(533 letters)
>mm_chr6_119513002_119513933
Length = 932
Score = 949 bits (491), Expect = 0.0
Identities = 524/543 (96%), Gaps = 14/543 (2%)
Strand = Plus / Plus
Query: 4 ggaattcacatacatgtccttaatagaagtcctgggggagagagagagagaaatcccatg 63
|||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 204 ggaattcacatacatgaccttaatagaagccctgggg-agagagagagagaaatcccatg 262
Query: 64 ggctatttatttacctacaaatacatgtatttgggaagtgattctaaaggttaaaaagaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggctatttatttacctacaaatacatgtatttgggaagtgattctaaaggttaaaaagaa 322
Query: 124 ctcagcaccacccaagctccagacagatattcagggcttcagactccaggcagtagtacc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 323 ctcagcaccacccaagctccagacagatattcagggcttcagactccaggcagtggtacc 382
Query: 184 cagtcctgggagagttaggtggccactcccaagctggactagtggttttaacagcacagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagtcctgggagagttaggtggccactcccaagctggactagtggttttaacagcacagt 442
Query: 244 atgataatgctctgtgcaagcggaaagggccagttccctgaagacctgacaagccagagc 303
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atgataatgctctgtgcaagcagaaagggccagttccctgaagacctgacaagccagagc 502
Query: 304 agcagtgtagatggatccaggaactaagactctctctctccctcatagttcccatgctac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agcagtgtagatggatccaggaactaagactctctctctccctcatagttcccatgctac 562
Query: 364 caaaaaaaaaaaaaaa-------------gtaaaaacttacatttattggtgtgggtgtg 410
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 563 caaaaaaaaaaaaaaaaaaaaaaaaaaaagtaaaaacttacatttattggtgtgggtgtg 622
Query: 411 tctctttggatgttctggatgtataggtacactagcaagcaggtactcagggaggccaga 470
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 623 tctctttggatgttctggatgtataggtacactagcaagcaggtactcacggaggccaga 682
Query: 471 agagggcataagaagccctgaagctggagttacaagtgagtgtgaaccacctggtatgga 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agagggcataagaagccctgaagctggagttacaagtgagtgtgaaccacctggtatgga 742
Query: 531 tgc 533
|||
Sbjct: 743 tgc 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 932
Length adjustment: 10
Effective length of query: 523
Effective length of database: 922
Effective search space: 482206
Effective search space used: 482206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no431_b11.g1 MSMg01no431_b11.g1 CHROMAT_FILE:
MSMg01no431_b11.g1 PHD_FILE: MSMg01no431_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:15 2005
(472 letters)
>mm_chr6_119567730_119568601
Length = 872
Score = 890 bits (460), Expect = 0.0
Identities = 469/472 (99%)
Strand = Plus / Minus
Query: 1 tgagggccagtccctaggatctacctggggctttgacattagttttaaaatatcaattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgagggccagtccctaggatctacctggggctttgacattagttttaaaatatcaattta 613
Query: 61 aaaaaagttggaacaagggagtaaagatggagggtatgttttaaatttcttttcttccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aaaaaagttggaacaagggagtaaagatggagggtatgttttaaatttcttttcttccac 553
Query: 121 tgctgccgtgttcaacagctgccaggacactgtctagattctcctttacaggccatttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgctgccgtgttcaacagctgccaggacactgtctagattctcctttacaggccatttgg 493
Query: 181 ctggaaaacacagtgcagctgtggctgtgtcttcctttgatctgatgcccttgaggtttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctggaaaacacagtgcagctgtggctgtgtcttcctttgatctgatgcccttgaggtttg 433
Query: 241 tctaaggaagtcagtttcttggaaagtgataattgtgactactaagctcacacgtactgg 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tctaaggaaatcagtttcttggaaagtgataattgtgactactaagctcacacgtactgg 373
Query: 301 tccttgcatccgctggacacactgcccatgcttttgttgacctcactcctttggagtctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tccttgcatccgctggacacactgcccatgcttttgttgacctcactcctttggagtctg 313
Query: 361 ctctccctgaaatgtctgtgtcttgatgttaaactgatttaaaaatgcaaacatatcaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctctccctgaaatgtctgtgtcttgatgttaaactgatttaaaaatgcaaacatatcaac 253
Query: 421 ctctgaatattgaacacatccaaaaaggataaaaggtaagtctttcagtggc 472
|||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 252 ctctgaatattgaacacagccaaaaaggataaaaggtaagtttttcagtggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
