BAC Information

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BAC

Clone NameMSMg01-431I12
Chromosome6 (Build37)
Map Location 103,462,124 - 103,618,897
singlet/doubletdoublet
Overlap geneChl1, LOC666141
Upstream genenone
Downstream geneLOC100043345, Cntn6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431I12.T7 (MSMg01no431_i12.b1)MSMg01-431I12.TJ (MSMg01no431_i12.g1)
ACCAG523768AG523769
length777822
length of high quality
(start - end)		249 (68 - 316)294 (72 - 365)
definitionCHROMAT_FILE: MSMg01no431_i12.b1 PHD_FILE: MSMg01no431_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:53 2005CHROMAT_FILE: MSMg01no431_i12.g1 PHD_FILE: MSMg01no431_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,462,124 - 103,462,370)(103,618,605 - 103,618,897)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATACATCCGCGGAATTC
CTGTGAAATTTCTGGAGCGGGAGGAGCAGCGGCACCATGATTCAGGTATT
GGAGACCAAAGCAGCGAGGGAGCTGGGTGGGTGGTCTGCGGTCGGGTTGA
GAGGATGGGCGGGGAGTGCGAGTAGCCAGCAAGTAAGAGCAGGTGTGCGT
GGCACTGAGCGGCTGGGCGGGGAAGGAGCTTCCGACTCTGCCTGGGGAGA
AAGGAGATCAATACCGCCCCGCAGGCCAGAACTGAGAAGAGCTGGCTGGT
AGCAGCCAGCGGAATTTGTTTGTTTCACAGCGCGCTCCCGCTGCTGGAAA
TAGGGGGTATTTTGCCCCCGCGCGTGCGTGCTGACCTATGTCACTCTTGT
AGGTACATCCACCCCCCCCCCTTGCATCGCGTTTCTGGTCCGTTATTGCC
AGCCCTATCTACTTCTTAATGTGTCCCCTTTCTTACTCCTTTCACCCCCC
CTTCCAATTCCCCCCTCTTCACACTTCTCCCTCCCCTTTCTCTCCTTCTT
CTTTCCTTTTTTCCTCTTTTTTTTATTCGTCTTCTTTTCTTGCTTTCCTC
CCTTCTTTCTTTCTCTCTCTTTCCCTTTTCCCTCTCCCCCTTTTTTTCCC
TCTCCCTCCCTCTTTTTTTTTTTTTTTACTTCCTTATCCACCCTCCCCCT
TCTTCCTCCTATTTTCCTCCCCTCTCTCCACTTTTCTTTTTTTTCTCCTC
CTTTTCTCTCATCTCTCTTTTTCTTCN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATGTCGTTAACACACTAGATGGGTTAAG
GGCTGGGCAGAGGACAGGGTACTCACAGGCCCTCCGCAAAACACTCGAGC
AATAGTGTATCCCCTTTGAGTACAGTCTTTGCGGATAAACTTCCCATTTG
GGCAGGAGGCAACAGAAGTTTGGGTTTCCTTTGCTTGATGGAATTTGCTG
ATTAAGAAAGGAGAAGAGTCAATGCCTTCCTCAATAAAGGTTGTAAAATT
TCTATGGTACCATGTCATTCTTTTTACATGATTTCACATGCTTTTATGTA
TATATTTTGGTGTGATGCGACCCTTAAACATACTTCTCCTATCTCCCCAA
ACTTGTCTTTTTCGCCCCCCCCAACTATGTTTTTTATACTTCCTCTTTTC
TCCTTCCTGTTTCTTTTATTCACCATTTTGCCTCGTTTCCTTCCTTCTCT
TTCCACTTTCATACATTTTTTTTTATTTTTCCCTCTTTTTCTCTTTTCTA
CCTTCTTCCTTTTTTCCCCCTTTTTTTTTTTTTTTCTCTTTCCCCCTTTT
TTACCCCTTTTTCTATTCTTCCTTTCCTTTTTTTCTCCTCCTCCCCATCC
CCGTCTCCTTCTTACCCCTTTTCTTTCTTTCCCTTCCTCTCCCCTCTTCT
TTTCTTTGTTTATTTCCTCCACCTTTATTACCCCTTCTTACCTCCTCTCC
TTTTTTCCCGCCTTCCTTCTTCCTCTTCTTCCTATTTCTCTTCTCCTTTG
TTTTATTCTTCCCATCCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_i12.b1 MSMg01no431_i12.b1 CHROMAT_FILE:
MSMg01no431_i12.b1 PHD_FILE: MSMg01no431_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:53 2005
         (249 letters)



>mm_chr6_103461924_103462572
          Length = 649

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgggaggagcagcggcaccatgattcaggtattggagaccaaagcagcgagggagctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgggaggagcagcggcaccatgattcaggtattggagaccaaagcagcgagggagctggg 260

                                                                       
Query: 61  tgggtggtctgcggtcgggttgagaggatgggcggggagtgcgagtagccagcaagtaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 261 tgggtggtctgcggtcgggttgagaggatgggcggggagtgcgagtagccagcaagcacg 320

                                                                       
Query: 121 agcaggtgtgcgtggcactgagcggctgggcggggaaggagcttccgactctgcctgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaggtgtgcgtggcactgagcggctgggcggggaaggagcttccgactctgcctgggg 380

                                                                       
Query: 181 agaaaggagatcaataccgccccgcaggccagaactgagaagagctggctggtagcagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaggagatcaataccgccccgcaggccagaactgagaagagctggctggtagcagcc 440

                  
Query: 241 agcggaa 247
           |||||||
Sbjct: 441 agcggaa 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no431_i12.g1 MSMg01no431_i12.g1 CHROMAT_FILE:
MSMg01no431_i12.g1 PHD_FILE: MSMg01no431_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:53 2005
         (294 letters)



>mm_chr6_103618405_103619098
          Length = 694

 Score =  489 bits (253), Expect = e-143
 Identities = 283/293 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtcgttaacacactagatgggttaagggctgggcagaggacagggtactcacaggcc 60
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 493 tatgtcgttaacacactagatgggataagggctgggcagaggtcagggtactcacaggcc 434

                                                                       
Query: 61  ctccgcaaaacactcgagcaatagtgtatcccctttgagtacagtctttgcggataaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 433 ctccgcaaaacactcgagcaatagtgtatcccctttgagtacagtctttgcagataaact 374

                                                                       
Query: 121 tcccatttgggcaggaggcaacagaagtttgggtttcctttgcttgatggaatttgctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcccatttgggcaggaggcaacagaagtttgggtttcctttgcttgatggaatttgctga 314

                                                                       
Query: 181 ttaagaaaggagaagagtcaatgccttcctcaataaaggttgtaaaatttctatggtacc 240
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 313 aaaagaaaggagaagagtcaatgccttcctcaataaaggtggtaaaatttctatggtacc 254

                                                                
Query: 241 atgtcattctttttacatgatttcacatgcttttatgtatatattttggtgtg 293
           |||||||||||   ||||||||||||||||||| |||||||||||||||||||
Sbjct: 253 atgtcattcttaaaacatgatttcacatgctttaatgtatatattttggtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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