BAC Information

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BAC

Clone NameMSMg01-431M14
Chromosome6 (Build37)
Map Location 66,186,193 - 66,186,350
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1
Downstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431M14.T7 (MSMg01no431_m14.b1)MSMg01-431M14.TJ (MSMg01no431_m14.g1)
ACCAG523964AG523965
length774849
length of high quality
(start - end)
466 (67 - 532)158 (66 - 223)
definitionCHROMAT_FILE: MSMg01no431_m14.b1 PHD_FILE: MSMg01no431_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:15 2005CHROMAT_FILE: MSMg01no431_m14.g1 PHD_FILE: MSMg01no431_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTGCGTAAATCCGCGGAATTCTGTCA
GACTTTCCCAGAAGATCTAATTCCAGTTCTTCACAAACTATTCCACAAAA
TAGAAACAGAAGATACTCTACCCAACTCATTCTATGAAGCCACAATTACT
CTGATACCTAAACCACAAAAAGACCCAACAAAGATAGAGAACTTCAGGCC
AATTTCCCTTATGAATATCGATGCAAAAATCCTCAATAAAGTACTATCTA
ACTGAAACCAAGAACACATCAAAACAATCATCCATCCTGACCAAGTAGGT
TTCATCCCAGGGATGCTGGTATGTGTCAATATATGGAAATGCATCAAAGT
CACCCAGAATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCAT
TAGATGCGAAGAAAGCATTTGACAAAATCCAACACCCATTCATGATAAAA
GTCTTGGAAAGATCAGGAATTCAAGGCCCATATCTAAACATGATAAATGT
ACTCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTGG
AAGCAATCCCACTAAAATCAGGGACTAGACAAGGGTGTCTACTTTCTCCC
TACCTATTCCACATTGTGCTTGAGGTCCTAGCCCGAAACAATAGAACAAC
AAAAGTAATCTTGGTGAAACCAATTTGGAAGGGAAGAAACCAAAATATCC
TCTTTTTGGGTATGAAAGGACACGAATATAAAAGGGGCCCTTAAAAATCC
CCCCCGAAGAATCCTCTAACCGGG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTTGGATCTCTTGTGTATCTCCTTCCTCCCTGCA
GATAGCATCTGTTATGAAATAATAACGACTCTTTTTGAGGGTGGGGATAC
TGGTGGGTCCCGTGAGCAATGTGACAGACCTACCTGGTATAAAGGAGGGT
TTTTTTTTGTTTGTTTGTTTGNNTTTTNTTTTTTTNTTNTTTTTTTTTTT
TTTTNTNNNNTTTTTTTTTTTTCNTNTTTTTTTTTTTTTTTTTTNTTNNT
TNNTNNTTTTTTTTTTTTNNNTNNNNTNNNNCNNNTTNNNNNNTTTTTTT
TTTTTTTCTTCTTCCCTTTCNCTTCCTTTTTTTCTCTCTTTTTTCCCGCG
TTTCGCCCCCCCCCTTCCTTCTTCTTTTTTTTTCTTTTTTCCTTTCTTTT
CTTTCCTTCCTTTTTTTTTTCCCCCTCCTCCTTTTCCTTTTCTCCTTCCC
TTCTTTTGTCCCTTCCTTCCTTTTTTTCTTCTTTTTCCTCTTTTTTTCTT
TCTCCTTTCTTTTCTTTCTTTTTCCCCCTTGCCTTTTTTTTTCTTTTTTC
CCTCCTCTTTCTTTTCCCTTTCCCTTCACTTCGCTCGCTTTTTTTCTCTT
CTCTTCTCTTCCTCCTCGGCTTTTTCTCCTGTGTATTCTTTCTTCTCCTT
CTCTTCCTCTCGTTTCCATGTTTTTTATCGTTTCTTTCTCTTTTTCTTTC
ATTCCCCTTCCCCTCTTTTACTATCTTACCGCCTCTTCCTTCTTTCCCTT
TCTTCCATTTTCACCTCCTCCATTTGTGTTCTTTCTCTCTATACATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_m14.g1 MSMg01no431_m14.g1 CHROMAT_FILE:
MSMg01no431_m14.g1 PHD_FILE: MSMg01no431_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:15 2005
         (158 letters)



>mm_chr6_66185993_66186552
          Length = 560

 Score =  286 bits (148), Expect = 4e-82
 Identities = 155/158 (98%), Gaps = 2/158 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttggatctcttgtgtatctccttcctccctgcagatagcatctgttatgaaataataa 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ctttggatctcttgtgtatctccttcctccctgcagttagcatctgttatgaaataataa 260

                                                                       
Query: 61  cgactctttttgagggtggggatactggtgggtcccgtgagcaatgtgacagacctacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgactctttttgagggtggggatactggtgggtcccgtgagcaatgtgacagacctacct 320

                                                 
Query: 121 ggtataaaggagggttttttt--ttgtttgtttgtttg 156
           |||||||||||||||||||||  |||||||||||||||
Sbjct: 321 ggtataaaggagggtttttttgtttgtttgtttgtttg 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 560
Length adjustment: 8
Effective length of query: 150
Effective length of database: 552
Effective search space:    82800
Effective search space used:    82800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)