BAC Information

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BAC

Clone NameMSMg01-432B12
Chromosome6 (Build37)
Map Location 45,711,531 - 45,711,884
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream geneRbpsuh-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432B12.T7 (MSMg01no432_b12.b1)MSMg01-432B12.TJ (MSMg01no432_b12.g1)
ACCAG524197AG524198
length783790
length of high quality
(start - end)		495 (38 - 532)343 (69 - 411)
definitionCHROMAT_FILE: MSMg01no432_b12.b1 PHD_FILE: MSMg01no432_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:41 2005CHROMAT_FILE: MSMg01no432_b12.g1 PHD_FILE: MSMg01no432_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGT
GGTTATTCTTTTTCATTAGATATTTCTTCATTTACATTTCAAATGTTATC
CAGTTTCCTGGTTTCCTCTCTGAAAACCCCCTATCCCCTCTTCCCTCCCC
CTGCTCACCAACCCACCCACTTCTGCCTCCTGGCCCTGGCATTCCCCTTT
ACTGGGGCATAGAGCCTTCACAGGACCAAGGGCCTCTCCTCTCACTGATG
ACCAACTCTGCTACATATGCAGCTGGAGCCATGAGTCCCACAATGTATAC
TGTTTGGTTGGCAATTTAGTCTCTGGGAGCTCTGAGATACTGGTTAGTTC
ATATTGTTGTTCCTTTGTGGTGTTGAAACAGCTTCAGCTACTTGGATCCT
TTCACTAGCTTACAGACCCTGTGCTCAGTCCAATGGATGGCAGTGAGCAT
CTACTTCTGTATTTGTCAGGGATCTGCAGAGCCTCTCAGGAGACAACTAT
ATCAGGCTCCTGTCATCAAGTGCTTGTTGGAATCCACAATAGTGTTTGGG
TTTAGTGATTATATATGGGATGGATCCCCNNNTGGAACAGTCTCTGGATG
GGCATTCCATCATGCTCTGGTCCCAAACTTGTGTCTCCTAAACCCCTTCC
AAGAATGTGTGGTTTCCCCTCTAAAACAAATCAAAAACCCCCTTCATGGA
TCTTTTCTCCTTCGTAACCCCAAAGACTTCATACTGATTTTTGGCTCTTC
TTAACCCTAAATATATAAATTACTATCAACACA

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTTCCTTTCTCATGAGTATGTAGATATAAAT
GTGTCAAACAAAATTAAACAGGAGGAAAAAGGCTAATGTGAAAACATTAA
ATAGAGTGAAGAATTAAGGCAAAAAACTAAAAATAATTGAATTCACAACA
ATATTTAAGATTGGGTTAGTCTGTTGGGGATAGGTAATTAGGTGCTCTTT
GTCTGCTAATTAGCTGTGTCCAAAAGGTGAAATTGTTTCTTACTGTCATG
ACTTGAGTTAGAGCTACACCTTGGCATGGGGTGTAATTTAAGGCTTCTGT
CCTCTATACATTAACCTGGGAGGGTATAGAGGTGTTCAATCTCCCTCTTA
TTTGCCGTTTAGAGACACAGTTCCTAAATCCTAAGGGAAATGCTGTCTGT
GTTTGATAACTGCATGACGAGTTTAAGGAGATGTACAGAATGCCCCAGAA
TGTGGCAGTTTCTGAATTATTATTCTCCAGAAAAGTCTATTCCTATTTCA
TCGCGCACGTACATGCTTCTTCCAATCCTTTTCTTCCTTAACCTCTTCCT
TTGTTACCTCTCTCCCCGAATTCCAGTCTCTTTCTCACTTTTTTTTCCTA
GTCTCTCCTCCCACTTTTTCTCCTGTCTCTCCTTATCCTCTCTTCTTCCC
TCGTCTCCCCTCTTCTTCACTTCTCTTATTCCTCTCACTCCCTTTCTCGT
TCGTCTTTGTCCACCTCCCCCCTCTCCTCCCCCTCTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_b12.g1 MSMg01no432_b12.g1 CHROMAT_FILE:
MSMg01no432_b12.g1 PHD_FILE: MSMg01no432_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:41 2005
         (343 letters)



>mm_chr6_45711229_45711972
          Length = 744

 Score =  607 bits (314), Expect = e-178
 Identities = 339/354 (95%), Gaps = 11/354 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttcctttctcatgagtatgtagatataaatgtgtcaaacaaaattaaacaggaggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 agttcctttctcatgagtatgtagatataaatgtgtcaaacaaaattaaacaggaggaaa 597

                                                                       
Query: 61  aaggctaatgtgaaaacattaaatagagtgaagaattaaggcaaaaaa-----------c 109
           |||| |||||||||||||||||||||||||||||||||||||||||||           |
Sbjct: 596 aaggttaatgtgaaaacattaaatagagtgaagaattaaggcaaaaaacaaaaaaaaacc 537

                                                                       
Query: 110 taaaaataattgaattcacaacaatatttaagattgggttagtctgttggggataggtaa 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 536 taaaaataattgaattcacaacaatatttaagattgggttagtctgttggggataggaaa 477

                                                                       
Query: 170 ttaggtgctctttgtctgctaattagctgtgtccaaaaggtgaaattgtttcttactgtc 229
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 476 ttaggtgctctttgtctgctaattagctgtgtccaaaaggtgaaattgtctcttactgtc 417

                                                                       
Query: 230 atgacttgagttagagctacaccttggcatggggtgtaatttaaggcttctgtcctctat 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atgacttgagttagagctacaccttggcatggggtgtaatttaaggcttctgtcctctat 357

                                                                 
Query: 290 acattaacctgggagggtatagaggtgttcaatctccctcttatttgccgttta 343
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 356 acattaacctgggagggtatagaggtgttcaatctccctcttatttaccgttta 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 744
Length adjustment: 9
Effective length of query: 334
Effective length of database: 735
Effective search space:   245490
Effective search space used:   245490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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