BAC Information

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BAC

Clone NameMSMg01-432E01
Chromosome6 (Build37)
Map Location 93,652,550 - 93,652,916
singlet/doubletsinglet
Overlap geneMagi1
Upstream genePrickle2, A730049H05Rik, LOC384461, LOC100043253, LOC665831
Downstream geneLOC100043262, LOC665856, Slc25a26, Lrig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432E01.T7 (MSMg01no432_e01.b1)MSMg01-432E01.TJ (MSMg01no432_e01.g1)
ACCAG524316AG524317
length791765
length of high quality
(start - end)
283 (41 - 323)367 (70 - 436)
definitionCHROMAT_FILE: MSMg01no432_e01.b1 PHD_FILE: MSMg01no432_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:54 2005CHROMAT_FILE: MSMg01no432_e01.g1 PHD_FILE: MSMg01no432_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTGGTCTTACTATGTTCCCTGTCATCCTGAAGCAGCTAGCTTGTTAGAA
GAGTCAAATAACTTACAAAGACACAGTTATAACAACACCTAGGTAGTAAT
AGTCTGGAGGCCTGTGACTGGGCACTCCAAGTTAACCGTGTCTGAATCAG
CAGCCTTTATATGGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCCCTCTCTCTCTCTCTCTCCCTGTCAAGATTCATGGATTCGGGAATCAA
AACAAACTTGTGGAGCATCTAGCAGCACTCCTTATTACCCACTAACAACA
TTTTTGCTTCCTGTCCCTCTAATTGTATGTTCTATTCCTCTATAAATCTT
ATTTCTTGAGAAGGTGGACACTTCTGTCCTGAGGCTCAACTACATTTTCA
TTGTATTATAAGTAATACTTCCCCTTGATTACGTTGTGGGTCTTAAAACT
ACGTCCTAATGTTGAATTTTTATTGCTTTTTTATGATTATCAGTTCTCGT
ATTGCAGTTGTTAGATTTATAACGGTTCTCCCCCCATTTTTCCCTCTTTA
TACTCTATTCCCTCTTTTTTCTTCCTTTTTCCAACTTATTCGCTATCTTT
TGTTTCCGTTCCATTGATTTTCTTTTTCTTCCCTCAAGTACGTCCTTTCG
CCTTTCTTTTTCACATTTCTCACTATTTTCTTTATTGTGTT
CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTGGTATAGCTGGGTTTACCTTCCTTGGCA
TTTTACAAGTTAGCAAGTTAACCTCAGCATTTATAATAAAAAGAACTAGA
CGCATACACCTAGGTAGAGCCCCAGTGTTAAAGTAGCTCAAGCAAAATAT
CCACGTGTGAGCAAGTACACTGTGCCTTGTACTTACCTATTTGTCTTGTT
CCCCTTGGATTATTCATTTACTGTGCATCTTACGCTCTAGACAAAGCACC
AAAAAGGAACAGTTCCCCCCAATGTGAAATCTAAGCCACCATTTTCATCT
TTCCTGTCCCATCATACAAAATTGGAGAAGATGGGAATTAAAATCTCAGG
CCTGGATACTCCTACAGCCCAAAATACAATTAACGAAGCAAATAACAAAG
AATGTGTGGTGGTAATTTAATGCCCCTTCAGGATTCACTGCAACTAAGTT
ATAGCGTATTCTCTTTAACTAATACGCGTATCACTTTATAGACTGTAAAA
ATGTACACGCTTTGCGTGTACATTANATACTCAGTAAGAATGACTTCTAA
GTAGCCACTTTTGATTGTCTCAGGGCAGCGACAGTGCCGTTTTTATCGAG
GGAGTTCTTGCCCTATCTAGGATTTTTCTAAATTTATTTGGAGTGTTTTC
TTTCTTTTCTCTTTAGCTCTTTTTTTGTGTGGTCTAACCTTCTCATTATC
CGTTTTTCTGAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_e01.g1 MSMg01no432_e01.g1 CHROMAT_FILE:
MSMg01no432_e01.g1 PHD_FILE: MSMg01no432_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:55 2005
         (367 letters)



>mm_chr6_93652350_93653116
          Length = 767

 Score =  702 bits (363), Expect = 0.0
 Identities = 366/367 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggtatagctgggtttaccttccttggcattttacaagttagcaagttaacctcagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgtggtatagctgggtttaccttccttggcattttacaagttagcaagttaacctcagca 508

                                                                       
Query: 61  tttataataaaaagaactagacgcatacacctaggtagagccccagtgttaaagtagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttataataaaaagaactagacgcatacacctaggtagagccccagtgttaaagtagctc 448

                                                                       
Query: 121 aagcaaaatatccacgtgtgagcaagtacactgtgccttgtacttacctatttgtcttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aagcaaaatatccacgtgtgagcaagtacactgtgccttgtacttacctatttgtcttgt 388

                                                                       
Query: 181 tccccttggattattcatttactgtgcatcttacgctctagacaaagcaccaaaaaggaa 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 387 tccccttggattattcatttactgtgcatcttaggctctagacaaagcaccaaaaaggaa 328

                                                                       
Query: 241 cagttccccccaatgtgaaatctaagccaccattttcatctttcctgtcccatcatacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagttccccccaatgtgaaatctaagccaccattttcatctttcctgtcccatcatacaa 268

                                                                       
Query: 301 aattggagaagatgggaattaaaatctcaggcctggatactcctacagcccaaaatacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aattggagaagatgggaattaaaatctcaggcctggatactcctacagcccaaaatacaa 208

                  
Query: 361 ttaacga 367
           |||||||
Sbjct: 207 ttaacga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)