BAC Information

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BAC

Clone NameMSMg01-432F01
Chromosome6 (Build37)
Map Location 35,453,363 - 35,453,725
singlet/doubletsinglet
Overlap genenone
Upstream geneBpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik
Downstream geneMtpn, LOC100039312, LOC100039327, 9330158H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432F01.T7 (MSMg01no432_f01.b1)MSMg01-432F01.TJ (MSMg01no432_f01.g1)
ACCAG524363AG524364
length837779
length of high quality
(start - end)
191 (39 - 229)362 (74 - 435)
definitionCHROMAT_FILE: MSMg01no432_f01.b1 PHD_FILE: MSMg01no432_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:59 2005CHROMAT_FILE: MSMg01no432_f01.g1 PHD_FILE: MSMg01no432_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCT
TTGTTCTGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAG
GTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGACGCCGTCTTTTGCCTTGCAGAAACTTTGGAGTTCCATTAGGTC
GCATTTGTCAACTCTCGATCTTACAGAGCTTGCGATTGCTGTTCTGTTCA
GGAATTTTTCCCCGGTATCTATGTCTTCTAGGTTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCCCTGGTTTTATGTGAAGTTCCTTGATCTACTT
ATACTTGTCTTTACCCCCCTGATATTTTTTTTTATTGTTCTTCCCTTCTT
CTTCCTGTTCATTTTCTTCTGTGCCTTTCTCCTTTTGTTCGTCCTTGTCC
TTCCGTCCTCCCGTGTCTCCGTTCCTATTTTCTTGTCGTTCTTTAATCCT
GTTTCTTCCCCGTGCCTTCTCCTCTTCTTCCTTTCGTCGTCCTCTTTCTC
TCCCCTCTTTTCTTTCTTCCTCTTGTAGTTCCTCCCCCATCCTCCTACAC
ATACTTTTCATTTCCTCTCTTTTTTTCTCGTCCCTTTTCTTCTTTTTTCC
CCCTTTCTCTTCTTGCTGCTTTTTTCCCGCTTCCCTTTTTTAATCGCCTT
CCCTCTCGTCATTGTCCTTTCTTTTAATCTCTCCATCTCTCGTTTTCCTT
CTCCTCCCCTGTCGCTTTCTTTTTCTCTCTTATTTTG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGCACTGACAACCTCCTAGGGTAAT
GAGACCAGCTGACCATCATTTATTTATGCCTTCAAAGGACTTTGGAAGCC
CAGGTAACAATGGGTGGAAGAACAAGTCTGTCATGTATTAATAAACAGGA
AGGCTGATCATGGGAGGTGGGTTCTCTTCCAAGAGGGATCACCAAGGACT
AATGGGCTCCCCGGAGCTTCAGCCCAGGCCTCTTTCTTCTAATGACTTAT
TGGTTGAGGTTACCAGGAAAGAAAATTGTATTTCTCCCTCTTTTGTCTGG
AGAAACTAAAGTCATTTTATTAGTAAATTCTTTTAAGAGAAGGTGAGATA
CACCTACCTGGAATGCTCCCAGCACATATAGTAGGTTACTGGAATTTTTA
AGTACTGAGCTCCTATGAAGTGTCAGACACCATGCTAGTAATGATGACAG
TGTAGCTTTTCTGGTGTGGATTCTCTCTTTCCTCGGTTCTCGTAAGACTT
ATCTATACCTATCCCAGTATCTCTTTTCTTTCTCTTCACTTCTTATTCCA
ATTTGTTCCTTCCCCTGATCTCTTTTTTTTTCTTCCTTCTTATTTCCTTA
CTTTTCCCCCATTTTCCTTCTCCCCCTTTCTCCTTCTCTATCTCCGTCTT
CTTCCTTTTTGTCTGACTCTCCTCTAGTTTTCCGTTCCTTCGTTATGCTT
AACAACTTTTGTGCCTAACCACCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_f01.g1 MSMg01no432_f01.g1 CHROMAT_FILE:
MSMg01no432_f01.g1 PHD_FILE: MSMg01no432_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:00 2005
         (362 letters)



>mm_chr6_35453163_35453925
          Length = 763

 Score =  640 bits (331), Expect = 0.0
 Identities = 355/363 (97%), Gaps = 1/363 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcactgacaacctcctagggtaatgagaccagctgaccatcatttatttatgccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagcactgacaacctcctagggtaatgagaccagctgaccatcatttatttatgccttc 260

                                                                       
Query: 61  aaaggactttggaagcccaggtaacaatgggtggaagaacaagtctgtcatgtattaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggactttggaagcccaggtaacaatgggtggaagaacaagtctgtcatgtattaata 320

                                                                       
Query: 121 aacaggaaggctgatcatgggaggtgggttctcttccaagagggatcaccaaggactaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaggaaggctgatcatgggaggtgggttctcttccaagagggatcaccaaggactaat 380

                                                                       
Query: 181 gggctccccggagcttcagcccaggcctctttcttctaatgacttattggttgaggttac 240
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggctccccggagctttaggccaggcctctttcttctaatgacttattggttgaggttac 440

                                                                       
Query: 241 caggaaagaaaattgtatttctccctcttttgtctggagaaactaaagtcattttattag 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggaaagaaaattgtatttccccctcttttgtctggagaaactaaagtcattttattag 500

                                                                       
Query: 301 taaattcttttaagagaaggt-gagatacacctacctggaatgctcccagcacatatagt 359
           ||||||||||||||||||||  |||||||| ||||| || ||||||||||||||||||||
Sbjct: 501 taaattcttttaagagaaggcagagatacatctacccgggatgctcccagcacatatagt 560

              
Query: 360 agg 362
           |||
Sbjct: 561 agg 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 763
Length adjustment: 9
Effective length of query: 353
Effective length of database: 754
Effective search space:   266162
Effective search space used:   266162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)