BAC Information

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BAC

Clone NameMSMg01-433I07
Chromosome6 (Build37)
Map Location 64,660,237 - 64,660,554
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid2
Downstream geneAtoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433I07.T7 (MSMg01no433_i07.b1)MSMg01-433I07.TJ (MSMg01no433_i07.g1)
ACCAG525282AG525283
length732763
length of high quality
(start - end)
493 (40 - 532)323 (68 - 390)
definitionCHROMAT_FILE: MSMg01no433_i07.b1 PHD_FILE: MSMg01no433_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:38 2005CHROMAT_FILE: MSMg01no433_i07.g1 PHD_FILE: MSMg01no433_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGGTTCACACCTAAACATGATAAAAGCAATCTACAGCAAACCAATAGCCA
ACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGGG
ACTAGAAAAGGCTGTCTACTCTCAACCTACCTATTCAGCATTGTACTTGA
AGTCCTAGCCAGAGCAAATCGACAACAAAAGGAGATCAAGGGGATACGAA
TTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTA
TATATAAGTGTTTCTAAAAATTCCACCAGAGAACTCCTAAGCCTGATAAA
CAGCTTCAATAAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGG
CCTTTCTCTATACAAAACATAAACAGGCTGAGAAAGAAATTAGGGAAACA
ACACCCTTCTCAATAGTCACAAATAATATAAAAGACCTTGGCGTGACTCT
AACTAAGGAAGTGAAAGATCTGTATGATAAGAAATTCAAGTTTCTAAAGA
AAGAAATTATAGAGGATCTCAGAAGATGGAAAGATCTTCCTTGCTCTTGG
ACTGGCCGGACCCACATTGGCCAATTGGCCATCTTGTCTTAATCTATCTA
CAGATGGCATGTAGATCTCCTTTAAAATTCTCACCCCAATTTTTCTCCCG
AATTACAAAGGGGGACCCGGCTTTATTTTCTT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAGTGCATGTCCTAAAGGAATCCTTAGGGGAT
AGACTGGGGAGCAGCATCAGCTAAGTACTGGAAGGCAGTTTAGTAGCACA
GGGGAACCCTGTCACTTGGGTCTACTGTGCTAGAAGTCCTAAGACTTTGC
TAGAGTATGGTTCTTAAACTTAACAGAAGCATCCAATGACAGTAAATAAG
GTAAAAAATGTCAAATGACTGAGAAAAGGGGCCAAGGAGGCCATGGAAGG
AGATAGCCCCTGTCTGGATTTCATGCCAAAGACCAGAGCCTCCAAGGAAA
TACCAGAAAATACTTTCATAACTAAATAAATCAGGGGGGACAGTACAGTG
TGAGCATTGACATCCATTGCAGGGCTTCCTTCTTCTGTCTTTGCTGTCAC
TAGGGCATAGGCTGGATTTTGCTATGTAGCCCACTCTTGCCTTACAGTCC
TAATCACCCCGCTTCAGTCTCCTGAGTGCCGAGCCTTTACCTTGTCTCTT
TTTGTTTCTCTCTCTCTGACCGTTCTCAACCTTCCCTGTTTTTTTTTACC
CTTGTTCCTCCCTGCTCTAACCTTCCTTTTTTCTTTCCCTTCCTCTCTTT
TCCTTCTTTTCTCCTTCCTCTTTCCTCTCTTCCCATATGGTTTTGTATCC
CCCCTATTTTTCTCCTTCCTTTTTCCTCTTTTTTCGCTTCCTTTTTTTCC
CTTCATCTTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_i07.g1 MSMg01no433_i07.g1 CHROMAT_FILE:
MSMg01no433_i07.g1 PHD_FILE: MSMg01no433_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:38 2005
         (323 letters)



>mm_chr6_64660037_64660758
          Length = 722

 Score =  586 bits (303), Expect = e-172
 Identities = 315/319 (98%), Gaps = 1/319 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtgcatgtcctaaaggaatccttaggggatagactggggagcagcatcagctaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtgcatgtcctaaaggaatccttaggggatagactggggagcagcatcagctaagta 260

                                                                       
Query: 61  ctggaaggcagtttagtagcacaggggaaccctgtcacttgggtctactgtgctagaagt 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ctggaaggcagtttagtagcacaggggaaccctatcacttgggtctactgtgctagaagt 320

                                                                       
Query: 121 cctaagactttgctagagtatggttcttaaacttaacagaagcatccaatgacagtaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaagactttgctagagtatggttcttaaacttaacagaagcatccaatgacagtaaat 380

                                                                       
Query: 181 aaggtaaaaaatgtcaaatgactgagaaaaggggccaaggaggccatggaaggagatagc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 aaggtaaaaaatgtcaaatgactgagaaaaggggccaaggaggccatggatggagatagc 440

                                                                       
Query: 241 ccctgtctggatttcatgccaaagaccagagcctccaaggaaataccagaaaatactttc 300
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccag-ctggatttcatgccaaagaccagagcctccaaggaaataccagaaaatactttc 499

                              
Query: 301 ataactaaataaatcaggg 319
           |||||||||||||||||||
Sbjct: 500 ataactaaataaatcaggg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space:   223882
Effective search space used:   223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)