Query= MSMg01no434_f24.b1 MSMg01no434_f24.b1 CHROMAT_FILE:
MSMg01no434_f24.b1 PHD_FILE: MSMg01no434_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:46 2005
(453 letters)
>mm_chr6_119561551_119562404
Length = 854
Score = 739 bits (382), Expect = 0.0
Identities = 436/458 (95%), Gaps = 9/458 (1%)
Strand = Plus / Minus
Query: 4 ggaattcaaaagttttctctcagctatatagtaagtttctgaccagcctgagagcggcct 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 511 ggaattcaaaagttttc-ctcagctatatagtaagtttctgaccagcctgagagctgcct 453
Query: 64 cagaattactcccttacc-------aaaaaaaaaaaaaaagattttggtgac-tttaaaa 115
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 452 cagaattactcccttaccaaaaaaaaaaaaaaaaaaaaaagattttggtgacttttaaaa 393
Query: 116 gttatattgtttaaagaacttaaaaacttaagttaaaatattttagtatactttttagct 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gttatattgtttaaagaacttaaaaacttaagttaaaatattttagtatactttttagct 333
Query: 176 acaaagctttttgcaagtgttttgggtccctccctctcccccggaaagaaattaggacag 235
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 332 acaaagctttttgcaagtgttttgggtccctccctctcccccagaaagaaattaggacag 273
Query: 236 gatgtcaccctgaacctaagctagtcctgatacttactgcctagcacaggctagcatcaa 295
|||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct: 272 tatgtcaccctgaacctaagctaatcctgatacttactacctagcaccggctagcatcaa 213
Query: 296 acttaaggcagtcctcttacctcagtctctccagtgctgggatcacacatctctactcca 355
|||| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 212 ccttacggcagtcctcttacctcagtctgtccagcgctgggattacacatctctactcca 153
Query: 356 agcttggttcataaggtaggtttttggatttgttatatgcatatgtgtacaggctgatag 415
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 152 agcttggttcataaggtagttttttggatttgttatatgcatatgtgtacaggccgatag 93
Query: 416 gatgagaacatgggtaaagggggtgaaggaaattcagg 453
||||||||||||||||||||||||||||||||||||||
Sbjct: 92 gatgagaacatgggtaaagggggtgaaggaaattcagg 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 854
Length adjustment: 10
Effective length of query: 443
Effective length of database: 844
Effective search space: 373892
Effective search space used: 373892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_f24.g1 MSMg01no434_f24.g1 CHROMAT_FILE:
MSMg01no434_f24.g1 PHD_FILE: MSMg01no434_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:47 2005
(422 letters)
>mm_chr6_119394687_119395508
Length = 822
Score = 754 bits (390), Expect = 0.0
Identities = 414/422 (98%)
Strand = Plus / Plus
Query: 1 acccaggacagctccccaccacactgcctcaccccactgtgtgctgttcctcagaagctg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccagtacagctccccaccacactgcctcaccccactgtgtgctgttcctcagaagctg 260
Query: 61 ccctccttattttctgagagaaggacctggggcttgcagatttagctgggtgggctgcca 120
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ccctccttattttctgagacaaggacctggggctcgcagatttagctgggtgggctgcca 320
Query: 121 acctgtctctgcgtctccaatgttgggattacaagcatgcatcaccgcactgtctctcta 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 acctgtctctgcgtctccaatgttgggattacaagcatgcatcaccgcaccgtctctcta 380
Query: 181 tgtgagtgctgggggctgaatttaggtcttcgtgccttttgtgtgggtgctggagatcaa 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgagtgctggggactgaatttaggtcttcgtgccttttgtgtgggtgctggagatcaa 440
Query: 241 attgggtcctcacgctggcagggcaagcaagttttcagacagagtcatcttgctagcctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgggtcctcacgctggcagggcaagcaagttttcagacagagtcatcttgctagcctg 500
Query: 301 tctgcccagcattcattccttgaataacgggaaacaggccaagaaggatgctatgcccca 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgtccagcattcattccttgaataacgggaaacaggccaagaaggatgctatgcccca 560
Query: 361 cctggaccagtctcatggtctcactcaaaactgcttaagcaggataggtgctgtgccaag 420
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 cctggaccagtctcatggtcttactcaaaactgcttaagcaggataggtactgtgccaag 620
Query: 421 ga 422
||
Sbjct: 621 ga 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
