BAC Information

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BAC

Clone NameMSMg01-435E01
Chromosome6 (Build37)
Map Location 117,275,962 - 117,402,579
singlet/doubletdoublet
Overlap geneEG640142, LOC100043777
Upstream geneAnubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422
Downstream geneLOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435E01.T7 (MSMg01no435_e01.b1)MSMg01-435E01.TJ (MSMg01no435_e01.g1)
ACCAG526600AG526601
length746751
length of high quality
(start - end)
547 (48 - 594)417 (74 - 490)
definitionCHROMAT_FILE: MSMg01no435_e01.b1 PHD_FILE: MSMg01no435_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:55 2005CHROMAT_FILE: MSMg01no435_e01.g1 PHD_FILE: MSMg01no435_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,275,962 - 117,276,504)(117,402,166 - 117,402,579)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAGTCTGGGCATTGAGGGAGTGGTACAGCAGGGACTTAAGAA
GTGTTTTGGCTAAAAAGCACCGTCTCCTTCTTTGGTCCCACAAGGTAATT
GGGATTAGGAAAAAACCTGACCTCTCTCCTTCATTTGTATCTGTCTCCAT
GGTTAACTTATTATAGAGTACCTCCCCCACCCCGTTCCAGATCCCCTAAC
AATATTTAAAGCTGTCTAGACATTTCCAGACACTTTAGATCCTGGGAAAA
ATAGGGTTGATCAATAAACACCTTATGACTAAGGACTAAACTACCACTAA
ACAGACATGAGAGCCATTGTCTGCTATGGTAAGCCTGGACCCTGGAGCAG
AAGTGACCACTTCATGAGAACCAGATTGCTCTCCTCAAATGATGACAATG
ACTAATTCAGAGTACGATACAGAAGCAGAGCTGAGTGAGGACCAACCAGA
CTACACCTGGATCAGACTGCTTAACTTTGCAGATCTCTTGCCTCTACCCC
ATTCTTCCACTTTAACCTAAAATGCATGTCAGTGCCTTGAAGACAGTCTT
GGGGCTCCCTTTATCAGTTCCTCCTTTCTCTCCTTTTCACAGCTAACTCT
GTCTTTAATTAACATGTTGGATGGCAGCTGCCCCCTCCTGCCATTAACAT
TCTGCAAGCCCTGATTTTTTGCTCTCAAACTTATCCCCGAAAAAGA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGGCAGGATGAGGTATCGATTGAGC
AGGGCTGGAGGCTTAGCAAACCGAACAGTAGAGTCCAAGGCATTAGGATG
CTGCAAATTAAAAAAGGAAAGTAATGAAAGGGACACTTATGAGGCATGAG
GGAGAGGCGATTGATTCTCTGCTGTACGAAGAATGAAAGGGAAAGACAAA
GCAAAGAAAGGGACAGAAATAGCTAAAGAAATAATGATCTTAGGGTTAAG
GGAATAGCTACCTTCAGGACCAAAGCAAAATGAATAGAAATCGAAACTTA
CCATGCCAAAGAAAACTGGAGACTGTTGGAGAAAGAACTGTAATCCTTAC
GAAGATAATTGTGTGTATAGAAGACAATAATAACTTATAATTAATAAGCT
AATGTCCAAAGAACTGTCAGAAAGTCGCTGGGTGATGCCGTGTCCCAGAA
GGAACTGAATCTGAAGTAGTTACTGCTGGACCATAGCAGCAGCATAATGA
AAAAAGAGTCACTTATTAGAAAATGTTTGTAAAGTAGGTGTGACTGATGA
TGGGACCGATTGATGCTGGATGCTATCTCAAGACCCCCGGTTAACAAGGA
GGTCCCCCAAATGGACCGCGCTGGGGACCCTTCCCAAATGGACCTGTCTA
TAAATCCCTCACCCCCCCCTGTCTTTTCTCTTAACCCACCCTCTCTGCTC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_e01.b1 MSMg01no435_e01.b1 CHROMAT_FILE:
MSMg01no435_e01.b1 PHD_FILE: MSMg01no435_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:55 2005
         (547 letters)



>mm_chr6_117275758_117276704
          Length = 947

 Score = 1011 bits (523), Expect = 0.0
 Identities = 538/543 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaagtctgggcattgagggagtggtacagcagggacttaagaagtgttttggct 64
           |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcaaagtctgggaattgagggagtggtacagcagggacttaggaagtgttttggct 264

                                                                       
Query: 65  aaaaagcaccgtctccttctttggtcccacaaggtaattgggattaggaaaaaacctgac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaagcaccgtctccttctttggtcccacaaggtaattgggattaggaaaaaacctgac 324

                                                                       
Query: 125 ctctctccttcatttgtatctgtctccatggttaacttattatagagtacctcccccacc 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 ctctctccttcatttgtatctgtctccatggttatcttattatagagtacctcccccacc 384

                                                                       
Query: 185 ccgttccagatcccctaacaatatttaaagctgtctagacatttccagacactttagatc 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 ccgttccagatcccctaacaatatttaaagctgtctagagatttccagacactttagatc 444

                                                                       
Query: 245 ctgggaaaaatagggttgatcaataaacaccttatgactaaggactaaactaccactaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgggaaaaatagggttgatcaataaacaccttatgactaaggactaaactaccactaaa 504

                                                                       
Query: 305 cagacatgagagccattgtctgctatggtaagcctggaccctggagcagaagtgaccact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagacatgagagccattgtctgctatggtaagcctggaccctggagcagaagtgaccact 564

                                                                       
Query: 365 tcatgagaaccagattgctctcctcaaatgatgacaatgactaattcagagtacgataca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 tcatgagaaccagattgctctcctcaaatgatgacaatgactaattcagagtacgatgca 624

                                                                       
Query: 425 gaagcagagctgagtgaggaccaaccagactacacctggatcagactgcttaactttgca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaagcagagctgagtgaggaccaaccagactacacctggatcagactgcttaactttgca 684

                                                                       
Query: 485 gatctcttgcctctaccccattcttccactttaacctaaaatgcatgtcagtgccttgaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatctcttgcctctaccccattcttccactttaacctaaaatgcatgtcagtgccttgaa 744

              
Query: 545 gac 547
           |||
Sbjct: 745 gac 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no435_e01.g1 MSMg01no435_e01.g1 CHROMAT_FILE:
MSMg01no435_e01.g1 PHD_FILE: MSMg01no435_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:55 2005
         (417 letters)



>mm_chr6_117401966_117402782
          Length = 817

 Score =  770 bits (398), Expect = 0.0
 Identities = 410/414 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggcaggatgaggtatcgattgagcagggctggaggcttagcaaaccgaacagtagag 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 agtggcaggatgaggtattgattgagcagggctggaggcttagcaaaccgaacagtagag 555

                                                                       
Query: 61  tccaaggcattaggatgctgcaaattaaaaaaggaaagtaatgaaagggacacttatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tccaaggcattaggatgctgcaaattaaaaaaggaaagtaatgaaagggacacttatgag 495

                                                                       
Query: 121 gcatgagggagaggcgattgattctctgctgtacgaagaatgaaagggaaagacaaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gcatgagggagaggcgattgattctctgctgtacgaagaatgaaagggaaagacaaagca 435

                                                                       
Query: 181 aagaaagggacagaaatagctaaagaaataatgatcttagggttaagggaatagctacct 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 434 aagaaagggacagaaatagctaaagaaataatgatcttaggattaagggaatagctacct 375

                                                                       
Query: 241 tcaggaccaaagcaaaatgaatagaaatcgaaacttaccatgccaaagaaaactggagac 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcaggaccaaagcaaaatcaatagaaatcgaaacttaccatgccaaagaaaactggagac 315

                                                                       
Query: 301 tgttggagaaagaactgtaatccttacgaagataattgtgtgtatagaagacaataataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgttggagaaagaactgtaatccttacgaagataattgtgtgtatagaagacaataataa 255

                                                                 
Query: 361 cttataattaataagctaatgtccaaagaactgtcagaaagtcgctgggtgatg 414
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 254 cttataattaataagctaatgtccaaagaactgtcagaaagtcactgggtgatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)