BAC Information

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BAC

Clone NameMSMg01-435F18
Chromosome6 (Build37)
Map Location 79,586,248 - 79,586,612
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384440, LOC621815
Downstream geneLOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435F18.T7 (MSMg01no435_f18.b1)MSMg01-435F18.TJ (MSMg01no435_f18.g1)
ACCAG526682AG526683
length785829
length of high quality
(start - end)
426 (67 - 492)365 (75 - 439)
definitionCHROMAT_FILE: MSMg01no435_f18.b1 PHD_FILE: MSMg01no435_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:03 2005CHROMAT_FILE: MSMg01no435_f18.g1 PHD_FILE: MSMg01no435_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAGAGGACCGCGGAA
NTCCATCAATGTCCTCCACTATATAAACAAACTCAAAGACAAAAACCACG
TGATCATCTTGATAGATGCTGAGAAAACATTTGACAAAATCCAACACCCA
TTCATGATAAAAGTCTTGGAATGATCAAGAATTCATGGACCATACCTAGA
CATAATAAAAGCAATATAGAGCAAACCAGTAGCCAACATCAAACTAAATG
GAGAGAAACTTGAAGCAATCCCATTAAAATCAGGGACTAGACAAGGCTAA
ACACTTTCTCCCTACCTATTCAATATAGTACTCGAAGTCTTAGCCAGAGC
AATTAGACAACAAAAGTAGGTGAAGGGGATACAAATTGGAAAGAAAGAAG
TCAAAATATCACTATTTGCAGATGATATGATAGTATATATAAGTGACCCT
AAATATTCTGCCAGAGAATTCCTAAACCTGATAAACAGTTTCAGTGAAGT
ATCTGGATATAAAATTAACACAAACATATCAGTGGGCCTTTCTCTACACA
AAGATCAAGCAGGCTGAAAAAAGAAATTAAGGAAACCACCCCCTTCTCCA
AAAATCTAAATTAAAAAAAAAAATTTTGTGGGGCTTCTACTTAAGAAATG
AAATACCGCTTCCTAAAAAATTTTATTTTTTTGACAAAAAAATTATTACC
CCCCTTTAGGGATTAATCTCTCCTCCTTCACCAAAATAAATATAAGTTTC
ACCCCCTTATAATACCCAAATATACCCTATCTCCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTATCCATAGACTGTGTGGAAAATAA
CTTGTTTTGAACTAAAACAGAGAGCAGTAAATTAAACTACAAGAGAAACC
AAGTCCCTGGCTAAATTCAGGTTAAAAGGTCATTAACTCAGTGAGCAGCA
GGGTCTGAGATTATTGAAATTAAGCAGGATCTGATTCAAAGTGAGCTTGT
TCAAAGACAGGCCCTGGTGAGAGGAAGGAGCTAAGACCTGCAAGTGTCTG
GGGAAATGGAATGTGAATATCTGCAGGGAGCATGTATGTAATCCAGCATT
CAGGAGGTAGACAGAGATTGGGGGATTCAAGGCCAGGCTCAGCTAGATAG
CAAGTTTCAGGCCAGCCTGTGCTAATAATACCGTGTCTCATAGACATCTC
ACATACTTACATACATACTTACACACCCCCTCACTCACACATATTCACAC
ACATTTTCTTATCTCCTTATACCATTTCTTTTTCTTTTTTCCTTTTTCTT
TATCTCTAAACCATCTCTTTTTCTTCCCCTCCGGACAATTTTAATTCTCA
TTATCTGGATTTCCGCCGTGTAATTCTTTTCTCTTTTTGTTTTTTTGGCG
CGCCTTTCCTTCATTTTACTTTTGCCCTAATATCTCTCCTCCAATATTCT
CCTCCCTCTCTCTTTCTTTACTTCCCTTTTATTTTTTCTTTCTACCTTTT
TTACCCTCCTTATTTTAATTGTTATCTGTTATATCTCTTTTTCTTACCGC
CACTTTTACTTTTCTCCCTTTTCACCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_f18.g1 MSMg01no435_f18.g1 CHROMAT_FILE:
MSMg01no435_f18.g1 PHD_FILE: MSMg01no435_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:04 2005
         (365 letters)



>mm_chr6_79586157_79586921
          Length = 765

 Score =  698 bits (361), Expect = 0.0
 Identities = 364/365 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatccatagactgtgtggaaaataacttgttttgaactaaaacagagagcagtaaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttatccatagactgtgtggaaaataacttgttttgaactaaaacagagagcagtaaatta 397

                                                                       
Query: 61  aactacaagagaaaccaagtccctggctaaattcaggttaaaaggtcattaactcagtga 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 396 aactacaagagaaaccaagtccttggctaaattcaggttaaaaggtcattaactcagtga 337

                                                                       
Query: 121 gcagcagggtctgagattattgaaattaagcaggatctgattcaaagtgagcttgttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcagcagggtctgagattattgaaattaagcaggatctgattcaaagtgagcttgttcaa 277

                                                                       
Query: 181 agacaggccctggtgagaggaaggagctaagacctgcaagtgtctggggaaatggaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agacaggccctggtgagaggaaggagctaagacctgcaagtgtctggggaaatggaatgt 217

                                                                       
Query: 241 gaatatctgcagggagcatgtatgtaatccagcattcaggaggtagacagagattggggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaatatctgcagggagcatgtatgtaatccagcattcaggaggtagacagagattggggg 157

                                                                       
Query: 301 attcaaggccaggctcagctagatagcaagtttcaggccagcctgtgctaataataccgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 attcaaggccaggctcagctagatagcaagtttcaggccagcctgtgctaataataccgt 97

                
Query: 361 gtctc 365
           |||||
Sbjct: 96  gtctc 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)