BAC Information

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BAC

Clone NameMSMg01-435K05
Chromosome6 (Build37)
Map Location 49,252,675 - 49,253,006
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a
Downstream geneCcdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435K05.T7 (MSMg01no435_k05.b1)MSMg01-435K05.TJ (MSMg01no435_k05.g1)
ACCAG526896AG526897
length775968
length of high quality
(start - end)
353 (47 - 399)---
definitionCHROMAT_FILE: MSMg01no435_k05.b1 PHD_FILE: MSMg01no435_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:27 2005CHROMAT_FILE: MSMg01no435_k05.g1 PHD_FILE: MSMg01no435_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCCTAATGTGCTTTAAATTGGGACTTCAAGCTCACCTGGGCATC
TCCATCTTGGTAAATACTAGATTCCTGAATGTTGGGCTTCTGCAGAAGAG
AACACTCTTTACTTTTGCATATTATTTGAGTTTGGGGTATCATTCTTCAG
TGAATCACAGACCATTACATTTGGGGGCTTGTTCACTGGCGTTCCCCGAC
TCCAACACAAATAGTGTTTTTCTGATCATCAGTTTGGGTGCCTGGTTGTA
TCTTGTCTTGTCTGTCTTTGTGTTTCTGGTTTCTGTTTCAGGTTTAATCT
GGAGGCTGAAGGGGACAAAGCAGACTCCTATTTTGTTACCCAGCTGGGGG
GGGGGTATTCCTAAAGCCCTACTATTAGCTCGACAATTTGTTATTCTTTT
TCTGCATCTGATCCACCTATGTACCTTTCGCCCTTCCCCGTATTTCGCAT
TCGACCCCTCCCTTTCCTTTCCTCTTTCTTTTTCCTTCCATCTCTTTTCG
CCGCTTTTATTCCTTTCCCTTTTTTCCCCTTTCTTTCTCCTTTTTCCTTT
CCCTTTTCCTCCCCTTCTCCGCTTTCTTTTTTCTCCTCCCTCTTTTCTTC
CCTTTTTCTCTTTCCCTCCTTTTCCCCCCCGTCCCTTTTCTTTTCCTTTT
CCCCTTTTAATTTTTCCCCACTTATTTACTTACTCTCCGTTTATTTCCCC
TTTCCCCTTTTTTCCCTTTACCCCG
TGCGAGGTTTCAGCGACACGGGAGAGAAGGCGGGCTTCCAAAAGGAGGGG
GGGAGGGAGNNGAAAGTTTCCCAAAAAAGAGGGGGNGGGAGGGGCAGCAG
AGACACAAGCCACAGAGTGACAGAGACAGTATAAGCCACCCATAGTTCAC
GGGTTCCCCCAACCACCGCCGCACGTTTGTATGACCCTTTACGGCGGAGG
TAGGATCGCACGAGAGCAAAAAAAGAGAAAGACACGAGGTGTGGTATCAT
ACCCAAAAAAAAAAACAACGGATCGCGCCCATATAAGTATGTTAACCAGT
CTCCAAAGTAAAACATAAGAGATACCAGTAGACCTATAACAAACCAAACA
AAAAAAAACGAGAACCGCTTATTTTTTTTTTTAAAGGAGAAGCCGCACCT
GACGGCACGCCGTTGCTAGTTTTTTATCTCTCCCCCTCCTCTCTAATGAG
AAATAATCAACACACCGAGAAATTTACATACATATCACTTACCCTCCCAC
ACAAACTCATATAAACCCAGTACACGTAAGAGTGATTATATTTTCTTATC
TATCCCCACCCAGTTATTTACCACCCGCCACCCCGCCACTATTTTTTCCT
ACCTCTTAGATACATTTTAAGCCACCAAACATTAAATCGCAATTACCCGC
TATTATTAGTTTATTTAAACCTACGCCAGGCTAAATAATATGCCTTATAA
TATACCCCGCACTATTCTAAATTATAGAATGTTCCACAAGCCAGTAACGG
CATAATCTAACACAACACTACAAACAACCAATGTGATAATATGCTCGGAA
CATGTTGTCCCCGCTTAACAACATATACTGTAATTTATATTACACCATTC
TCGATATGCCGAGAATTAGCACATAACCCATAACACCAACAATAATATGT
AATAACAACACCCCCCACACAATTTTTTCTATTTTCTCACCACTTACCAG
CAGTGTATGAATACAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_k05.b1 MSMg01no435_k05.b1 CHROMAT_FILE:
MSMg01no435_k05.b1 PHD_FILE: MSMg01no435_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:27 2005
         (353 letters)



>mm_chr6_49252454_49253206
          Length = 753

 Score =  603 bits (312), Expect = e-177
 Identities = 324/332 (97%), Gaps = 7/332 (2%)
 Strand = Plus / Plus

                                                                       
Query: 29  tgggacttcaagctcacctgggcatctccatcttggtaaatactagattcctgaatgttg 88
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 222 tgggacttcaagctcacctgggcatctccatcttggtaaatactagatccctgaatgttg 281

                                                                       
Query: 89  ggcttctgcagaagagaacactctttacttttgcatattatttgagtttggggtatcatt 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggcttctgcagaagagaacactctttacttttgcatattatttgagtttggggtatcatt 341

                                                                       
Query: 149 cttcagtgaatcacagaccattacatttgggggcttgttca-------ctggcgttcccc 201
           |||||||||||||||||||||||||||||||||||||||||       ||||||||||||
Sbjct: 342 cttcagtgaatcacagaccattacatttgggggcttgttcagaattcactggcgttcccc 401

                                                                       
Query: 202 gactccaacacaaatagtgtttttctgatcatcagtttgggtgcctggttgtatcttgtc 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gactccaacacaaatagtgtttttctgatcatcagtttgggtgcctggttgtatcttgtc 461

                                                                       
Query: 262 ttgtctgtctttgtgtttctggtttctgtttcaggtttaatctggaggctgaaggggaca 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttgtctgtctttgtgtttctggtttctgtttcaggtttaatctggaggctgaaggggaca 521

                                           
Query: 322 aagcagactcctattttgttacccagctgggg 353
           ||||||||||||||||||||||||||||||||
Sbjct: 522 aagcagactcctattttgttacccagctgggg 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)