BAC Information

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BAC

Clone NameMSMg01-435M08
Chromosome6 (Build37)
Map Location 63,328,158 - 63,328,547
singlet/doubletsinglet
Overlap geneGrid2
Upstream geneC130092O11Rik, GA_x5J8B7W6GG0-4757855-4757501, LOC667099
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435M08.T7 (MSMg01no435_m08.b1)MSMg01-435M08.TJ (MSMg01no435_m08.g1)
ACCAG526998AG526999
length792761
length of high quality
(start - end)
392 (45 - 436)424 (76 - 499)
definitionCHROMAT_FILE: MSMg01no435_m08.b1 PHD_FILE: MSMg01no435_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:38 2005CHROMAT_FILE: MSMg01no435_m08.g1 PHD_FILE: MSMg01no435_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGGGTGTACAATCTAGACATTTTCCTTATGAATAATGAAAGTGCT
ATGAGCCCAAGTCATTTAAATTAAAGAAGAGTCAAATTGATGTGAGAGAA
AAGTGAGCACAGGAAAGAGACAATAACTTCAAATTATGTTTTTAACTTAA
GGTAAATACCAACAAATGTACAGAGGCTATAAGAGGGTCATGCCAACTGT
AAAAAAAAATGGAAAATAAGTATACAGTGTTAGGGTGAGCATAGAACACT
TTATTTATTCTTCATATTCTATTATAGAATTTTTGAATGTCACAGAGGGT
CAGTCTGTAATTAAGAAGGATAGTGAATGTTGTCTAATATAGTTAATAAA
ATAATACAAATATTTTACATCTATTGACAGGGTTAGGGTAAATCAAATCA
GAGAAACTGATGAGCCCAAGCTGAGTCCCTTAAATACGGAGAAGTTGGCG
CTTGCTATAACGTGTTCCTCATCGCTTCTTCTGTCCAATCTTTCCGCCTA
TTCTCCCTTACATCTCCCAACATTTCTTCCCTCCTCACTTTTTGTCCCTT
ATATCACTTCCCCCCCCCTCCTTTTCTTCCTGTTCATTTGACCTTGGCAC
TTTTCCCCTTCTCCCCCTTCTGCGTCTTTCCTCCTTCTTCTTCATCCTTC
CCCCCCCCCCCCTCTTTTTTTTTCCCATCTATCCCCTTTCCGCCCCCTCC
TCTTTTTTTTTCCTTCCCCTTTTTCACCCCTTTCTTTCTTTA
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAAAATCAAAGAACACATATATA
AATGGAACTTATCTTACTGCAATTGAAGAGGATATGTTTAATCCCTAAAT
GAAATTTAAGCGAACAGAAATAAATGGCTGAAAGAAATTATGTAAGACAA
TCAAGAATTCGATTTTGTGTCCAATATAGTGATATAAATATTAAAGAGAA
CTCAAGCTTAAATTAAAATGGAATGGAAAACATCAATAATTGCCACCACC
CTCATATAAGAACCTCAGGGTTTAGCCTCATAGGTAGAGTATATCTAGTA
AATTCTTGAAATTAAAGCAGAGGAATTAAATTGCTCATGGAGAGAATGTG
AAAACAAGAAATGAATGGAACACACGAGAACTTTTAAACACTAGGAAAAC
ATATTTTCTTTTAACTATGAACATTGATATAAGAGAAGAGTCACTGTCAA
TGCCATAGACCATATTTTGAATCTGCTCATGGAAGAAAATGTGCAACCCC
AAAGAAAAAAATGGTATGAATACCATTTAAACCGAACAGAAAAATTTCCG
AGCATAATACACTTGGGGAAGAACTAATTAGCGAAGAAGGGGAGGATTTT
TCCCCCCTTTAAAAATTTTTTAAGAAACACCTACCTCTCCCTAAAGAAAA
TATGGTTGAGGGTTTGGACAATAGCCCCCCCTCTCAAAGGGGTTCTCTGT
TATTCAAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_m08.b1 MSMg01no435_m08.b1 CHROMAT_FILE:
MSMg01no435_m08.b1 PHD_FILE: MSMg01no435_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:38 2005
         (392 letters)



>mm_chr6_63327954_63328747
          Length = 794

 Score =  685 bits (354), Expect = 0.0
 Identities = 381/392 (97%), Gaps = 6/392 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgggt--gtacaatctagacattttccttatgaataatgaaagtgctatgagc 62
           ||||||||||||  ||  | ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 594 gaattcctgggtgagt--agtctagacattttccttatgaataatgaaagtactatgagc 537

                                                                       
Query: 63  ccaagtcatttaaattaaagaagagtcaaattgatgtgagagaaaagtgagcacaggaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ccaagtcatttaaattaaagaagagtcaaattgatgtgagagaaaagtgagcacaggaaa 477

                                                                       
Query: 123 gagacaataacttcaaattatgtttttaacttaaggtaaataccaacaaatgtacagagg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gagacaataacttcaaattatgtttttaacttaaggtaaataccaacaaatgtacagagg 417

                                                                       
Query: 183 ctataagagggtcatgccaactgt--aaaaaaaaatggaaaataagtatacagtgttagg 240
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 416 ctataagagggtcatgccaactgtaaaaaaaaaaatggaaaataagtatacagtgttagg 357

                                                                       
Query: 241 gtgagcatagaacactttatttattcttcatattctattatagaatttttgaatgtcaca 300
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 356 gtgagcatagaacactttatttattcttcatattctaaaatagaatttttgaatgtcaca 297

                                                                       
Query: 301 gagggtcagtctgtaattaagaaggatagtgaatgttgtctaatatagttaataaaataa 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 296 gagggtcagtctgtaattaagaaggatagtgaatgttgtctaatagagttaataaaataa 237

                                           
Query: 361 tacaaatattttacatctattgacagggttag 392
           ||||||||||||||||||||||||||||||||
Sbjct: 236 tacaaatattttacatctattgacagggttag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 794
Length adjustment: 9
Effective length of query: 383
Effective length of database: 785
Effective search space:   300655
Effective search space used:   300655
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)