Query= MSMg01no435_m11.b1 MSMg01no435_m11.b1 CHROMAT_FILE:
MSMg01no435_m11.b1 PHD_FILE: MSMg01no435_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:39 2005
(270 letters)
>mm_chr6_15744543_15745212
Length = 670
Score = 449 bits (232), Expect = e-130
Identities = 258/270 (95%), Gaps = 7/270 (2%)
Strand = Plus / Minus
Query: 5 gaattctgacttttc----caatgaaaaggttacagacactgagcacaaagatttgttac 60
|||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaattctgac---tcagcacaatgaaaaggttacagacactgagcacaaagatttgttac 430
Query: 61 agattccgtgcttaccgctgtctagaggagtcagagaccacaaacgattttaaggtgggg 120
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 429 agattccatgcttaccgctgtctagaggagtcagagaccacaaacgactttaaggtgggg 370
Query: 121 gagacatgtgaagccaaaatggattgtaagttttgcatgtcagtatggtagagcatgcca 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 369 gagacatgtgaagccaaaatggattgtaagttttgcatgtctgtatggtagagcatgcca 310
Query: 181 gcaaggaccacactaaggagctataggcaggatttccagagcagccttggctttaggaga 240
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 309 gcaaggaccacactaaggagctagaggcaggatttccagagcagctttggctttaggaga 250
Query: 241 acagtgcccaaaccaacaaacaaaatcaac 270
||||||||||||||||||||||||||||||
Sbjct: 249 acagtgcccaaaccaacaaacaaaatcaac 220
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no435_m11.g1 MSMg01no435_m11.g1 CHROMAT_FILE:
MSMg01no435_m11.g1 PHD_FILE: MSMg01no435_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:39 2005
(444 letters)
>mm_chr6_15562885_15563728
Length = 844
Score = 795 bits (411), Expect = 0.0
Identities = 435/447 (97%), Gaps = 9/447 (2%)
Strand = Plus / Plus
Query: 1 ttaagatgggaa-cctagggaagaaaacaggagctacaaatgccgcgtatcaccagcaga 59
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 200 ttaagatgggaaacctagggaagaaaacaggagctacaaatgctgcgtatcaccagcaga 259
Query: 60 atacagagatagaagaaataatctgagaattagaagatataattgaagacattggtacta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atacagagatagaagaaataatctgagaattagaagatataattgaagacattggtacta 319
Query: 120 ccatcaaagaacatgctaaatctaaatgtttatgacacaaaactgtatctgtccagcagc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccatcaaagaacatgctaaatctaaatgtttatgacacaaaactgtatctgtccagcagc 379
Query: 180 catggacgaagagtattcacctgaatggagggctaaaaatgaaaagggcagggagatgag 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catggacgaaaagtattcacctgaatggagggctaaaaatgaaaagggcagggagatgag 439
Query: 240 gagatttt----aatgaagccaagacaaggttctgatcaaggctcaaagtttaataatca 295
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaga----gaagaatgaagccaagacaaggttctgatcaaggctcaaagtttaataatca 495
Query: 296 gtatggtgtttataaagggaaaactcacaaaacccatcccctgcttcagctggagtatgt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtatggtgtttataaagggaaaactcacaaaacccatcccctgcttcagctggagtatgt 555
Query: 356 tgcagaacaaggtcaacgcagcaggcacaacagctaaattcccatgggaacttgcaactg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgcagaacaaggtcaacgcagcaggcacaacagctaaattcccatgggaacttgcaactg 615
Query: 416 cagcctaggcagattgtctacctaggt 442
||||| |||||||||||||||||||||
Sbjct: 616 cagccaaggcagattgtctacctaggt 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
