BAC Information

Click to search

BAC

Clone NameMSMg01-435N11
Chromosome6 (Build37)
Map Location 129,683,260 - 129,683,675
singlet/doubletsinglet
Overlap geneKlri2
Upstream geneKlrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1
Downstream geneGm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435N11.T7 (MSMg01no435_n11.b1)MSMg01-435N11.TJ (MSMg01no435_n11.g1)
ACCAG527051AG527052
length785775
length of high quality
(start - end)
403 (43 - 445)423 (73 - 495)
definitionCHROMAT_FILE: MSMg01no435_n11.b1 PHD_FILE: MSMg01no435_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:44 2005CHROMAT_FILE: MSMg01no435_n11.g1 PHD_FILE: MSMg01no435_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:44 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTGTTTTCATAATATGTAAATGTACCACATTTTCTGTATCCATTCCT
CTGTTGAAGGACATCTGGATTCTTTCCAGCTTTGGGGTATTTTAAATAAG
GCTGCTATGAACATAGTGGAGCATATGTTTTTGTTATTTGTTGGAGAGTC
TTTTGGGTATATGCCCAGGAGTGGTATAGCTGGGTCTTCAGGTAATAATA
CTATTTCCAGTTTTGTGAGGAACAGCTGGACTGATTTCTAGTGATTGTAC
CAGCTTGCAATCCCATCATCAATGGAGGAGTGTTCCTCTTTCTCCACATC
CTTTCCAGCATCTGCTGTCACTTGAGTTTTTGATATTAGCTATTCTGATT
GGTGTGAGGTACAATCTCAGGGTTGTTTTGATTTGCATTTCTCTGACGAC
TACCGATGTTGAACATTTTTTTTTGTGCCTCCTGGCCATACTATCCTCCC
TTGTTGAACATCCTTTTGTTATCTCTCGTCCCCCTTTTTACTCACCGCCT
ATCTTTACCCCCCTGCTCTTCCTTTCTTTGCCCCTTCCTTTCTTTCGCTT
ACTTCCCTTTTCTTATCCTTTCATTCTCACCTTTTTTTTTTCTCCTTCTC
TCTTTTCTTTCTTTTTCTCTTTCTTTTCCTTCCTCTTTCTCCTTTTTCTT
TTTTCTTTTTCCCCTTCTTTCCTCTCCCCCCCTTTTGTCTCTCTCCCTTT
CTTCTCCCCCTTTTCCTTTCCCCCTTTTTCTTTTG
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCATCTTGTGATCATAGACTCCAAAGCA
GAGGTGGTAAGTCACACACTTCTGCCTTTCTGTCTCTTTGTAACTGTTGG
CACTGGGAACAAAGGCCATGAAGATCAGAATTTGACAGACTGAATGCTCT
GGAGGTCATGTGACACCTGCTCATGTCCATTTACTATTATCCTTAGTGAG
AACATAGGGAGGGCTCTCCAGCATTCCAAGGTCTGATGCTACAAGAAACC
CAAAGCAGAAAATGATCTCCAGCTGGCATATTCTATGCAGGAGGACCCAG
AGCTGCTCTTCAGTAAGGAAGAGACATTTCACCCAGCACAGTCACTACTC
CCTGTAGCCCTAGCACTTGAGAGGATGAAACAGGAGGACCACCATGAGCT
TGAAGCCAGTTTGGATTACATAGTGAGACTCCAGCCAAACTTGGGTTGTG
GGGCAAAATTCTGCCTTATACTTTTAGATTTATTTTTTCCCCACACTCCA
ATTTTGGTTCAATCCTTAGTTTCACACACAGCACTATTTATTGTGCCCTC
CCCTCATTCTGCCCGCATTCCTTACTCCCTTCATTATCCTTTTACCTCTT
CTTTTTCCTCTCATTTCTTCATCTTATTCTTTTTCCTCCCTTTTCTCTCC
CTTTCCCTCCTCTTTACCTTTACCATCGTGGTTTCTTTTCCTTTACCTCC
TTTTATATCTTCCCCCCCTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_n11.g1 MSMg01no435_n11.g1 CHROMAT_FILE:
MSMg01no435_n11.g1 PHD_FILE: MSMg01no435_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:44 2005
         (423 letters)



>mm_chr6_129683148_129683970
          Length = 823

 Score =  721 bits (373), Expect = 0.0
 Identities = 406/417 (97%), Gaps = 2/417 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatcttgtgatcatagactccaaagcagaggtggtaagtcacacacttctgcctttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 528 tcatcttgtgatcatagactccaaagcagaggtggtaagtcacacacttatgcctttctg 469

                                                                       
Query: 61  tctctttgtaactgttggcactgggaacaaaggccatgaagatcagaatttgacagactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tctctttgtaactgttggcactgggaacaaaggccatgaagatcagaatttgacagactg 409

                                                                       
Query: 121 aatgctctggaggtcatgtgacacctgctcatgtccatttactattatccttagtgagaa 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 408 aatgctctggaggtcatgtgacacttgctcatgtccatttactattatccttagtgagaa 349

                                                                       
Query: 181 catagggagggctctccagcattccaagg-tctgatgctacaagaaacccaaagcagaaa 239
           |||||||||||||| |||||||||||||| | |||||||| ||||| |||||||||| ||
Sbjct: 348 catagggagggctccccagcattccaaggct-tgatgctataagaaccccaaagcaggaa 290

                                                                       
Query: 240 atgatctccagctggcatattctatgcaggaggacccagagctgctcttcagtaaggaag 299
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 289 atgacctccagctggcatattctatgcaggaggacccagagctgctcttcagtaaagaag 230

                                                                       
Query: 300 agacatttcacccagcacagtcactactccctgtagccctagcacttgagaggatgaaac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 229 agacatttcacccagcacagtcactactccctgtagccctagcacttgagaggctgaaac 170

                                                                    
Query: 360 aggaggaccaccatgagcttgaagccagtttggattacatagtgagactccagccaa 416
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 aggaggaccaccatgagcttgaagccagtttggattacatagtgagactccagccaa 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)