BAC Information

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BAC

Clone NameMSMg01-435N23
Chromosome6 (Build37)
Map Location 16,103,139 - 16,103,518
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxp2, Mdfic
Downstream geneLOC100041116, Tcfec, EG435881, Tes, EG232599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435N23.T7 (MSMg01no435_n23.b1)MSMg01-435N23.TJ (MSMg01no435_n23.g1)
ACCAG527075AG527076
length814786
length of high quality
(start - end)
423 (41 - 463)379 (71 - 449)
definitionCHROMAT_FILE: MSMg01no435_n23.b1 PHD_FILE: MSMg01no435_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:47 2005CHROMAT_FILE: MSMg01no435_n23.g1 PHD_FILE: MSMg01no435_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATT
CTCACCTGATGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGCTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCTAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
CTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCC
TCAACAGAGGAATGGATACCGAAGATGTGGTACATCTACACAATGGAGTA
CTACTCCGCTATTAAAAAAAATGATTTTATGAAATTTCTGGCCAAATGGA
TGGAACTGGAGGGGATCCTCCCGAACGAGGGAACCCATTCCCCAAGGAAC
TCCCCCACTAGGTCCCTCGCGAAGGGGGAATTAACCCCCCCCCCACTATA
CCCTAAATAAAAAAACAATTTTTTTAAACCCCTGTACTCCCAAAAAAGAA
AACGAAGGTGTGGCATAATTGTCCTCCCTTTTAAGGGAACAAAAACCCTT
CGTTCCGTTCCCCACCCAAATTTTCTTCCTTTATAATACCGAATTGCTTA
CCCCTTTATTTGTT
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTACTTCTTGTAGCTCTGGCATGTGTAGA
ATGTATTCAATAAAGAACAGAGGTTTGGTGATGGTCATCATGGAATAGAA
TTAGGGGTTTCAAGGCAATCAAGATTTTTTTTTGTATTAAATTAGAATGC
CAGTTTGGGGCATGGAAAATTTTTATATAAACTCTAGCTTATATGCTGTT
TGCACATTTCTGTATTAGAATTCTCCAATGGCTGTTTAAATAGAATGATT
TGTTAGCCAGCCACTTCTTACGTACGAGATATCATCACAAAAGTTAGTAT
ATGAGTAACAAATCCATGAAGGGCTAAGTATTTAGAAAGCTACACCAAGG
AAAGCCAAAACAGAATTAAAGTCATCACTGGAGCGGAGCTATGAACAGCA
TCAGAGAAGGAGAAAAATAAGTTGTGGATAATTTACAGACCTATGAGTAC
CATGAACAATTGCCCCTGAAGAAAAAGAAAGGGGGATTTTAAAAAATAAA
AAAAGAATAAAGTTTATAAAGGGGTCTCCCAAAATATAATAGGTCCCAAA
AAAATCCCTCCAATTTTCCCTGGAAAAAAAAAACACACCCGGGAATTTTT
TTTTTTCTCTGCCCCCGGGAAATCGGGAATTCCACCTTCTTTTTCTTTTC
CTCTAAGTTTATACGGAGGAGACAGGGGGGGGTTCCTTTCTTGAATAAAA
ACCTATAAGCTTTTCTTTTTTATTTTTCCTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_n23.g1 MSMg01no435_n23.g1 CHROMAT_FILE:
MSMg01no435_n23.g1 PHD_FILE: MSMg01no435_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:47 2005
         (379 letters)



>mm_chr6_16102939_16103718
          Length = 780

 Score =  702 bits (363), Expect = 0.0
 Identities = 376/381 (98%), Gaps = 3/381 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actacttcttgtagctctggcatgtgtagaatgtattcaataaagaacagaggtttggtg 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actacttcttgtagctctggcgtgtgtagaatgtattcaataaagaacagaggtttggtg 260

                                                                       
Query: 61  atggtcatcatggaatagaattaggggtttcaaggcaatcaagattttttttt--gtatt 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 261 atggtcatcatggaatagaattaggggtttcaaggcaatcaagatttttttttttgtatt 320

                                                                       
Query: 119 aaattagaatgccagtttggggcatggaaaatttttatataaactctagcttatatgctg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattagaatgccagtttggggcatggaaaatttttatataaactctagcttatatgctg 380

                                                                       
Query: 179 tttgcacatttctgtattagaattctccaatggctgtttaaatagaatgatttgttagcc 238
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tttgcacatttctgtattagaattctccaatggct-tttaaatagaatgatttgttagcc 439

                                                                       
Query: 239 agccacttcttacgtacgagatatcatcacaaaagttagtatatgagtaacaaatccatg 298
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 440 agccacttcttacgtacgagatatcatcacaaaagttagtatatgagaaacaaatccatg 499

                                                                       
Query: 299 aagggctaagtatttagaaagctacaccaaggaaagccaaaacagaattaaagtcatcac 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagggctaagtatttagaaagctacaccaaggaaagccaaaacagaattaaagtcatcac 559

                                
Query: 359 tggagcggagctatgaacagc 379
           |||||||||||||||||||||
Sbjct: 560 tggagcggagctatgaacagc 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 780
Length adjustment: 9
Effective length of query: 370
Effective length of database: 771
Effective search space:   285270
Effective search space used:   285270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)