BAC Information

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BAC

Clone NameMSMg01-435O13
Chromosome6 (Build37)
Map Location 29,556,799 - 29,557,294
singlet/doubletsinglet
Overlap geneTnpo3
Upstream geneSnd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5
Downstream geneTspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435O13.T7 (MSMg01no435_o13.b1)MSMg01-435O13.TJ (MSMg01no435_o13.g1)
ACCAG527102AG527103
length771769
length of high quality
(start - end)
502 (43 - 544)496 (75 - 570)
definitionCHROMAT_FILE: MSMg01no435_o13.b1 PHD_FILE: MSMg01no435_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:49 2005CHROMAT_FILE: MSMg01no435_o13.g1 PHD_FILE: MSMg01no435_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCATTACATTGCCCACACTAGCCTGAAACTCAGAGATCCACCTGCCTC
TGCTTCCTAATGTCCCCTGGATACTAGTTGGCTTGATCTATAAGGAATCC
CAGAAGAACAGAGTCAGCAAATAAATTCTTCCAGCTCCCTCACTGCAAAG
GACCTCAAGTTTTGTCACCAGAAACATATCATTCTCCCTCAAAGAAGCTA
AGTAACTGCTCCTCTCTCTCTATTCCTTCCAGAAGAAAATAACAGTTTGG
CTAGAGGTTATAATTCTATTTCTTCTGACAACAGTGTACCCGCAGCTGTA
TAGTGTGTTTATAACAAACCCGCCTGGGGCATGGAAAGGAAAGGAGACCT
GTAGGCCTGCCTCTCAGCTCTGGACATGTTACATTATCAGCATGAGTATA
CTATGTGGTCAGCACAGGCTTGTTTGCTTGTTTCCAATTACCAACATCTA
GTTACTTAGAGGCTATATTGTGAGTTAAAGGCCAGCCTAGAGAACTTAAA
AAGTTTTTTTTATCAAAATAAAAATAAAAAGGATGGGAATAGAGCTTAGA
GATTAACAATTTGCACAACATGTGTGGAGGCCTTAAGGTCAATCCCTAAA
ATCTCTCATTAAAAAAACAAAAACAACCCTACCTCTCCTTATAGAAAAAA
GAAAAAAGAAAATCTCCCAACCAAATTATTCTGTCCAGGTTGGGCATCTC
CTTCCTGTTGGAATTTAAAAA
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAGGAAACAGACTGGGAGGA
AGAAGCAGCCCATTACCAGCCAGCTAATTGGTCAAGAAAAAAGCCAAAAG
CGGCTGGCGAAAGCCAGCGTACTGTTCAACCTCCGGGCAGTCGGTTTCAA
GGTCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCAATGCGC
AGAGAGATGCGCAGAGAGGCAATGCGCAGAGAGATGCGCAGAGAGGCAAT
GCGCAGAGAGATGCGCAGAGATGTAATGCGCAGAGAGATGCGCAGAGAGG
CAGTGCGCAGAGAGATGCGCAGAGAGGCAGTGCGCAGAGAGGCAGTGCGC
AGAGAGGCAGTGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAA
TACAACAGGCATTTCCAGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCAC
GCTCCGGTAGAATACGTACAAATTAAAGAACTTGCCGAGTCGGTCCGTAN
ATACGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTCGCCG
GCATGGGACTAACTCCCTGCTGACTTGGGAACGAATTGTAAAGCCCTTCT
CCCTAATATGGGCAAAATATGGAAAGGGAAAGCGTTTTGTGTCCCATATT
GTTCCATCTCATTTCCCAATTTAACCCCTCCGTTTTTTTTCTTAAACAAA
AAATAGGTTTTTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_o13.b1 MSMg01no435_o13.b1 CHROMAT_FILE:
MSMg01no435_o13.b1 PHD_FILE: MSMg01no435_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:49 2005
         (502 letters)



>mm_chr6_29556593_29557494
          Length = 902

 Score =  936 bits (484), Expect = 0.0
 Identities = 493/496 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcattacattgcccacactagcctgaaactcagagatccacctgcctctgcttcct 66
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcattacatagaccacactagcctgaaactcagagatccacctgcctctgcttcct 266

                                                                       
Query: 67  aatgtcccctggatactagttggcttgatctataaggaatcccagaagaacagagtcagc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aatgtcccctggatactagttggcttgatctataaggaatcccagaagaacagagtcagc 326

                                                                       
Query: 127 aaataaattcttccagctccctcactgcaaaggacctcaagttttgtcaccagaaacata 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 327 aaataaattcttccagctccctcactgcaaaggacctcaagttttgtcaccagaaacatg 386

                                                                       
Query: 187 tcattctccctcaaagaagctaagtaactgctcctctctctctattccttccagaagaaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcattctccctcaaagaagctaagtaactgctcctctctctctattccttccagaagaaa 446

                                                                       
Query: 247 ataacagtttggctagaggttataattctatttcttctgacaacagtgtacccgcagctg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ataacagtttggctagaggttataattctatttcttctgacaacagtgtacccgcagctg 506

                                                                       
Query: 307 tatagtgtgtttataacaaacccgcctggggcatggaaaggaaaggagacctgtaggcct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tatagtgtgtttataacaaacccgcctggggcatggaaaggaaaggagacctgtaggcct 566

                                                                       
Query: 367 gcctctcagctctggacatgttacattatcagcatgagtatactatgtggtcagcacagg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcctctcagctctggacatgttacattatcagcatgagtatactatgtggtcagcacagg 626

                                                                       
Query: 427 cttgtttgcttgtttccaattaccaacatctagttacttagaggctatattgtgagttaa 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cttgtttgcttgtttccaattaccaacatctagttacttagaggctatattgtgagttaa 686

                           
Query: 487 aggccagcctagagaa 502
           ||||||||||||||||
Sbjct: 687 aggccagcctagagaa 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)