BAC Information

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BAC

Clone NameMSMg01-435O21
Chromosome6 (Build37)
Map Location 62,543,766 - 62,544,169
singlet/doubletsinglet
Overlap genenone
Upstream geneC130092O11Rik
Downstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099, Grid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435O21.T7 (MSMg01no435_o21.b1)MSMg01-435O21.TJ (MSMg01no435_o21.g1)
ACCAG527118AG527119
length798807
length of high quality
(start - end)		427 (42 - 468)404 (71 - 474)
definitionCHROMAT_FILE: MSMg01no435_o21.b1 PHD_FILE: MSMg01no435_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:51 2005CHROMAT_FILE: MSMg01no435_o21.g1 PHD_FILE: MSMg01no435_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAACTGAGTTACACTGAATGGGTGAGAAGCACCTAAAGAAATGTCCAA
CATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCAAC
CTCACACCAGTCAGAATGGCTAAGATCAAAATCTCAGGTGACAGCATATG
TTGGCTAGGATATGGAGAAAGAGGAACAGTCTTCCATTGTTGATGTGATT
TCAAGCTGGTACAACATTTCTGAAAATCAGTTTGGAGGTTCTTCAGAAAA
CTAGACATAGTACTACCTGAGGATCAAGCTATACCATTATTTGGCATATA
CAAAAATGATGCTCGAACATGTAATAAGAACACATGCTCCACTATGTTCA
TAGAAGTCTTATTTATAATAGTCAGAAGCTGTAAAGGACCCAGATGTCCG
AACAGAGGAATACATACAGAAAATGTGGTACATTTACACAATTACTACTC
AGCTCTTATAAACAGCGAATTCATGAAATTCTTGGACAAATGGAAGTATT
TTGGAGGATATCATCCTGAGTGAGGTAACCCCACCCCCAAAGAACACACC
TAGTATGCCCTCCCTGATAAGGGGAAATTATCCAAAATCTCCGAATTCCC
AGAACCAATCCCCGGACACTTGAAGGTCCGAAAAAAATGACCCAAACTGG
GGGGTTCTGGCCTCCTTAAAGGGGGACAAGACCCCCCCGCGGAATAGGAA
AAAAATTGGGGCCAAATTTTGTGAAAACTCTCTAATGGGCCCCTCGGC

GATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTGCCATGTTGTGTGCCAAAGTAAATATT
CTATTTGAACTACAATATGTCAAAGATAATATGTCATATCCAATATCCCA
TAATTTTGAATATGTAGAACTGGCCCCTTTATGTGCTCTAGAAGTTCATT
GATGGGGTAGATGTCGGGATGGGCCAATTCAAAGCCCTGGATCTATTTCT
GAGAGGCATCTGTGCCTTAAGACTTACATTATCTTTTGTTCTTAACCTAA
GTACTTTACAACACCAACAGTATTATATTAGTGTGTAAATTAGGCATGGT
TTCTTTTCAGAACATACAACAAGAATGAGGCAACATTAATATTGCTATAA
TTAAAGAAGAATATAGTTTGGTCATGTAACATTGAAGATGGGATGAAATT
TTTAGTTAAAATTGAAAACTAGATTGCCAGTAATGACTTATGGGACATTT
AGCTTCTAGAAAAAGAAAAAAACAGATTACTTGAGCTAATCGGGCTGGGA
TGCCCGATATGATTGTTCTTGAAGAGTAAACAGTCCACTTTTGTTTGCTA
AAATTTGGAAAATCCCCCCACCCTTTAATTTGGGTATAAAAAAAAAATCC
TGGTGTTGGGGGAATGACTCCTCCCCATTTAGTTTTGGCCCCATCCCAAT
TACTCGATTTTGTTTTTTAAACCCCTCAACCCTACGGGTTAATTTTTTTC
TCTTTGTTTCCCCCTCGTTCTCTTCTTTTTACCTGGTAACCAATATTTTT
GTCGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_o21.g1 MSMg01no435_o21.g1 CHROMAT_FILE:
MSMg01no435_o21.g1 PHD_FILE: MSMg01no435_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:51 2005
         (404 letters)



>mm_chr6_62543374_62544177
          Length = 804

 Score =  758 bits (392), Expect = 0.0
 Identities = 401/404 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgccatgttgtgtgccaaagtaaatattctatttgaactacaatatgtcaaagataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cttgccatgttgtgtgccaaagtaaatattctatttgaactacaatatgtcaaagataat 737

                                                                       
Query: 61  atgtcatatccaatatcccataattttgaatatgtagaactggcccctttatgtgctcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atgtcatatccaatatcccataattttgaatatgtagaactggcccctttatgtgctcta 677

                                                                       
Query: 121 gaagttcattgatggggtagatgtcgggatgggccaattcaaagccctggatctatttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gaagttcattgatggggtagatgtcgggatgggccaattcaaagccctggatctatttct 617

                                                                       
Query: 181 gagaggcatctgtgccttaagacttacattatcttttgttcttaacctaagtactttaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gagaggcatctgtgccttaagacttacattatcttttgttcttaacctaagtactttaca 557

                                                                       
Query: 241 acaccaacagtattatattagtgtgtaaattaggcatggtttcttttcagaacatacaac 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 556 acaccaacagtattatattagtgtgtaaattaggcatggtttcttttcagaacatacacc 497

                                                                       
Query: 301 aagaatgaggcaacattaatattgctataattaaagaagaatatagtttggtcatgtaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 496 aagaatgaggcaacattaatattgctataattaaagaagaatatagtttggtcatgtgac 437

                                                       
Query: 361 attgaagatgggatgaaatttttagttaaaattgaaaactagat 404
           ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 436 attgaagatgggatggaatttttagttaaaattgaaaactagat 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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