BAC Information

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BAC

Clone NameMSMg01-435P05
Chromosome6 (Build37)
Map Location 43,320,019 - 43,531,720
singlet/doubletdoublet
Overlap geneTpk1, LOC665747
Upstream geneEpha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox
Downstream geneLOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435P05.T7 (MSMg01no435_p05.b1)MSMg01-435P05.TJ (MSMg01no435_p05.g1)
ACCAG527134AG527135
length796789
length of high quality
(start - end)		319 (69 - 387)344 (73 - 416)
definitionCHROMAT_FILE: MSMg01no435_p05.b1 PHD_FILE: MSMg01no435_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:53 2005CHROMAT_FILE: MSMg01no435_p05.g1 PHD_FILE: MSMg01no435_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,320,019 - 43,320,337)(43,531,379 - 43,531,720)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTGGTTTTCCCTAATAAAGTAAATCAGTTGAAGCCTGGGCTCT
GATCTCCTTAATGTTAAAGACCAAGCTCGCCTGACTGCAATTAGCTACCC
TCACTGAAATTACCTGCCCACCAATCTTATATTTAGAAAGCCAGTTTTAA
TACTGCTATTCATAATGCCCACATCATGAGTTATTTTCCTCTACTATTAT
AACAGCTTATATTCAAATGCTAAATTCTACACCTCAAGATCTGGTTGTTC
CAAGAGGAGCAGTTCCCCGCCTATACCAGCTTTTGTTGTATAATGCTTGC
CTACCAAGTTCTTCTTGATTGGTTGATAAAGCTATAGGTGCTGGCTGAAA
AAGAGGTAGGTGGCGCTTCATTTCCTTTGCTGCTGTCTGATGTATATACC
ACTACCAGGTTACTTACTCTTATTTGCTGTCCGTGCAAGCGTACTTTTCC
TCTCTTCTTCCTGCATCTTCTTTTTCCCTTCTCTTCCATTTTTTCTTCTC
CCCACTCTTTTTCCTCCCCTACTCTTTCCTTTCTTTCCACCTTCCTAACC
CATTCATACTTTTCTTTTTCTTTTCCCCTCCTTCTCCCCCTTTTTCTTAC
CCCCCCTCTCTATTATTCCTTCTCCTCTCTTTTTTCCTCCCTTTATTCCC
CTCTTCTTCCTCTTTTTCCCCTCCTTTCCATTTCCCCCCTCTTTTTTCAC
TTTCCTTATTTTTCTCCCCTTTCTCCTCTCGCTCTTTTCCTTATTN

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACATAACTGAAGTTGGAAGGACATGG
CCTATAATATGGCCTCTATGCTTCCTAGAGGAAAAAAAAAACACATGGTA
TCAATGTTTAATTGACAGTTTTGTCTGTTTTTCTTTTTAAGTCTTTCTCA
GTGGTACTGCTTAGATATGTCTTTTTGTGTCGGTGTCTTAGGTATGGTCA
ACCTGAATTTGAGGTCAGCCATTTAATTAGGGAACAAAACATTGTGTCTA
TGGCGTGAAATGATGGTAATGTATCCTGCATTTGCAATATCATAAAACAG
CAAAGTTGTCTTTTAATCTTTGAATTTTAGACCCTAATTATGATAGTCTA
ATTTAGTGATCTTTAGTAGAAATAGCCATTATTCTCACCCGGTATAGTTT
GTGGGCTAAAAAAGCCCATACTATAATCATTTTGAATTTTGTTTTGAAAT
CTGACTATACAACTCGACCACTTATTTTCTTTTTTTAATCTCACTCTCCA
CCTCCTTTTTTTTAATTATTTCCCCTACCCCCCCCCTTATTCTTTTTCTG
CTTTTTTCCCTCCCCTTCCTTATAATCTTTTTATTTTCTCTTTTATACCT
TTGTTACATCCTATTTTATTCATTCAAATTTCTTACTCCCCTTATTTCTC
TCCCCCAATTCAACCCCAACAAACTTATCCTACCAATCCCATAAATACCA
TATTCCACCTTCTTTATCTCTATTCTCTCCCTCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_p05.b1 MSMg01no435_p05.b1 CHROMAT_FILE:
MSMg01no435_p05.b1 PHD_FILE: MSMg01no435_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:53 2005
         (319 letters)



>mm_chr6_43319819_43320537
          Length = 719

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taataaagtaaatcagttgaagcctgggctctgatctccttaatgttaaagaccaagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taataaagtaaatcagttgaagcctgggctctgatctccttaatgttaaagaccaagctc 260

                                                                       
Query: 61  gcctgactgcaattagctaccctcactgaaattacctgcccaccaatcttatatttagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctgactgcaattagctaccctcactgaaattacctgcccaccaatcttatatttagaa 320

                                                                       
Query: 121 agccagttttaatactgctattcataatgcccacatcatgagttattttcctctactatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccagttttaatactgctattcataatgcccacatcatgagttattttcctctactatt 380

                                                                       
Query: 181 ataacagcttatattcaaatgctaaattctacacctcaagatctggttgttccaagagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataacagcttatattcaaatgctaaattctacacctcaagatctggttgttccaagagga 440

                                                                       
Query: 241 gcagttccccgcctataccagcttttgttgtataatgcttgcctaccaagttcttcttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagttccccgcctataccagcttttgttgtataatgcttgcctaccaagttcttcttga 500

                              
Query: 301 ttggttgataaagctatag 319
           |||||||||||||||||||
Sbjct: 501 ttggttgataaagctatag 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no435_p05.g1 MSMg01no435_p05.g1 CHROMAT_FILE:
MSMg01no435_p05.g1 PHD_FILE: MSMg01no435_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:53 2005
         (344 letters)



>mm_chr6_43531179_43531920
          Length = 742

 Score =  615 bits (318), Expect = e-180
 Identities = 337/344 (97%), Gaps = 2/344 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacataactgaagttggaaggacatggcctataatatggcctctatgcttcctagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tcacataactgaagttggaaggacatggcctataatatggcctctatgcttcctagagga 483

                                                                       
Query: 61  aaaaaaaaacacatggtatcaatgtttaattgacagttttgtctgtttttctttttaagt 120
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aaaaaaaa--acatggtatcaatgtttaattgacagttttgtctgtttttctttttaagt 425

                                                                       
Query: 121 ctttctcagtggtactgcttagatatgtctttttgtgtcggtgtcttaggtatggtcaac 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 424 ctttctcagtggtactgcttagatatgtctttttgtgttggtgtcttaggtatggtcaac 365

                                                                       
Query: 181 ctgaatttgaggtcagccatttaattagggaacaaaacattgtgtctatggcgtgaaatg 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctgtatttgaggtcagccatttaattagggaacaaaacattgtgtctatggcgtgaaatg 305

                                                                       
Query: 241 atggtaatgtatcctgcatttgcaatatcataaaacagcaaagttgtcttttaatctttg 300
           |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 304 atgggaatggatcctgcatttgcaatatcataaaacagcaaagttgtcttttaatctttt 245

                                                       
Query: 301 aattttagaccctaattatgatagtctaatttagtgatctttag 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aattttagaccctaattatgatagtctaatttagtgatctttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 742
Length adjustment: 9
Effective length of query: 335
Effective length of database: 733
Effective search space:   245555
Effective search space used:   245555
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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