NTTTTTTTACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAG
GATCCGCGGAATTCATTTTTTCTCTAAGCCCAGCTCTAAGGATTGGTATA
ACAAGCATGTGCCTAAGAAATACCTACTAGGTAGCAATGAGGACACCTAC
CTGGCTGCTTTCCTAGAATAAGGTAGTAGAGAAGTGTGCAGTGTACCATA
GCAGAGAGTAGATTAGGAATAATGATGAATTATACTATGATCAGGAAAAA
TTATCTATGTAAAATACCATTAAATGAAAGGGACATAATTATGACTGGGA
CCTGACAGAGTAAATAGAAACAAATGTTGCCCTGCGTTTGAACACCTTCC
ATTTTTATAGAGTGTCTAATGATTCTTCATAAAATCACACAGTCCAGTGG
ATTTCAATAATTGGATTTCATCTATTTTCTATAGAAAATGACAATGAAGA
AAATCGTCAAACACTGAGACATTAAGGAAAGAAATAAGCATTTGGTTGGG
TGATTTTTTTTCATGATCTTTCTTGTCAGCATCTTTAAAAAAAATCATGC
CATTATTAAGGAAAGAAATATGGTGAGCAATACCTGTTCTACCTTCACAA
TTGATCTCCATGAGTAATATCATCAATGGTAGACTTGATCTTCACATGTA
GACATTTGTGGCTTTAAACGAATTAGCAAGTTCTCAGCTTGTAGCTTCTA
TTGCAAAGGTACCTGTACTAAACTAATAAC

GAGGAGCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAAAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCA
CTGATAAGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATA
CATTTCCTAAACACATGAAACTCAAGAAAAATG

Query= MSMg01no436_a01.b1 MSMg01no436_a01.b1 CHROMAT_FILE:
MSMg01no436_a01.b1 PHD_FILE: MSMg01no436_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:57 2005
         (688 letters)



>mm_chr6_4106513_4107597
          Length = 1085

 Score = 1181 bits (611), Expect = 0.0
 Identities = 657/673 (97%), Gaps = 5/673 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattcattttttctcta-agcccagctctaaggattggtataacaagcatgtgcctaag 75
           |||||||||||  || || |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 885 gaattcattttacct-tacagcccagctctaagaattggtataacaagcatgtgcctaag 827

                                                                       
Query: 76  aaatacctactaggtagcaatgaggacacctacctggctgctttcctagaataaggtagt 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 826 aaatacctactaggtagcaatgaggacacctacctggctgctttcctagaataagatagt 767

                                                                       
Query: 136 agagaagtgtgcagtgtaccatagcagagagtagattaggaataatgatgaattatacta 195
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 766 agagaagtgtgcagtgtaccatagcagacagtagattaggaataatgatgaattatacta 707

                                                                       
Query: 196 tgatcaggaaaaattatctatgtaaaataccattaaatgaaagggacataattatgactg 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tgatcaggaaaaattatctatgtaaaataccattaaatgaaagggacataattatgactg 647

                                                                       
Query: 256 ggacctgacagagtaaatagaaacaaatgttgccctgcgtttgaacaccttccattttta 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ggacctgacagagtaaatagaaacaaatgttgccctgcgtttgaacaccttccattttta 587

                                                                       
Query: 316 tagagtgtctaatgattcttcataaaatcacacagtccagtggatttcaataattggatt 375
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 586 tagagtgtctaatgattcttcataaaatcacaccgtccagtggatttcaataattggatt 527

                                                                       
Query: 376 tcatctattttctatagaaaatgacaatgaagaaaatcgtcaaacactgagacattaagg 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tcatctattttctatagaaaatgacaatgaagaaaatcgtcaaacactgagacattaagg 467

                                                                       
Query: 436 aaagaaataagcatttggttgggtgattttttttcatgatctttcttgtcagcatcttta 495
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| 
Sbjct: 466 aaagaaataagcatttggttgggtga--ttttttcatgatctttcttgtcagcatcttt- 410

                                                                       
Query: 496 aaaaaaatcatgccattattaaggaaagaaatatggtgagcaatacctgttctaccttca 555
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaaaaaatcatgccattattaatgaaagaaatatggtgagcaatacctgttctaccttca 350

                                                                       
Query: 556 caattgatctccatgagtaatatcatcaatggtagacttgatcttcacatgtagacattt 615
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 349 caattgatctccatgagtaatattatcaatggtagacttgatcttcacatgtagacattt 290

                                                                       
Query: 616 gtggctttaaacgaattagcaagttctcagcttgtagcttctattgcaaaggtacctgta 675
           ||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 289 gtggctttaaaagaactagcaagttctcagcttgtagcttctatagcaaaggtacctgta 230

                        
Query: 676 ctaaactaataac 688
           |||||||||||||
Sbjct: 229 ctaaactaataac 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1085
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1075
Effective search space:   728850
Effective search space used:   728850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)