BAC Information

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BAC

Clone NameMSMg01-436I22
Chromosome6 (Build37)
Map Location 40,634,228 - 40,634,685
singlet/doubletsinglet
Overlap geneMgam
Upstream geneBraf, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138
Downstream geneEG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436I22.T7 (MSMg01no436_i22.b1)MSMg01-436I22.TJ (MSMg01no436_i22.g1)
ACCAG527595AG527596
length758629
length of high quality
(start - end)		470 (47 - 516)30 (171 - 200)
definitionCHROMAT_FILE: MSMg01no436_i22.b1 PHD_FILE: MSMg01no436_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:40 2005CHROMAT_FILE: MSMg01no436_i22.g1 PHD_FILE: MSMg01no436_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:40 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTCAATTCTGCTGTTTCTCTGTTTGTGGTTATCAAAAAAATGT
ATTCCCTGAGAGGCTGTATCACAGACACCTATGTCAACAATGTTACAATA
TTATAGAAGAGAAACTAGCACACATAACAACAGATGAAGGCGTTTTCCTA
CCCATGGCATTGCTGTTCATCAGGAGGACTCCATGGGCATTGCCATCTTC
CTCCAGCCCCATGTAGTAAGGGTGAACACCATAAGAATTCTTCTTGTACT
GAGAGTAAAGAGGAGAAAACAGAATAGTTTAGGAAAACTGATCCCTGAGA
AAGAAACAAAAATTGCCTGCTTAGTTGTGTCCAGCCTTCTTAGCAGAGTA
AGCTAAAAACTTGAGGGTCAAGGCACATGAAAATGATCCATTTATCTAAT
AGCAGAAGGTAACTGTCCAGTGAAGCTGGGGATGAAGGAGAAGGAGGAGG
AGAAGGAGGAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGGNGNNNNNNNNNNNNNNNNTTNNNGGN
GNTTNGTGGTNTTTTTTGTTTTTTGTGTTGTTTTTTGGTTTTGTTTTGTT
TTTGTTTTTTGTTGTTNTTTTTTTTTTTTTTTTTGTTTTTTTTTGGTGTT
TTTTTTTG

CTTTTCTCTTTTTCACTTTGTTTTTTGTTTTTTTTATTTTTNNNNNNNNN
NNCCCCCCCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTNG
CTCTCAGTCACNTTTTAANATATATATATATATNATATATATATATATAT
ANNNNATATATATATATATATAANANNNNNNNNNNNNNNNGNNNNNNNNN
NGGNNNNNGGNNNNNNTGGATTTAAAATATATTTTTTTAANATAGTATAA
GAGTTNTAGGGGNTTTGTGGGGGGGGGGNNGGGGGGGGNNGAGGNNNNTT
NNTNNNTNNNNTAGGNTAANTNTTTNCATGGGNAGTGGGTAGGNAGGATG
NNNNTAGGGNNNNNNNNNNGGGGGGGGGGGCGTGTTTTGTTGGGGAGAAA
AAAAAAAAAAAAAATAAAANNNNNNNNAAAAAAATATTCTTTTTTNCTCT
TTCTTTTCCCTCCCTTGTGTTTGTGTTTTTTTTTTTTTTTTGATTNCTTA
TTTCTTTATTTTTGTTCCGGGTTTTCTATCCTTTAATTATTTTTTTTTCC
CCCCCCTTATACTTTTATTTGTATGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_i22.b1 MSMg01no436_i22.b1 CHROMAT_FILE:
MSMg01no436_i22.b1 PHD_FILE: MSMg01no436_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:40 2005
         (470 letters)



>mm_chr6_40634049_40634918
          Length = 870

 Score =  861 bits (445), Expect = 0.0
 Identities = 456/461 (98%), Gaps = 3/461 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcaattctgctgtttctctgtttgtggttatcaaaaaaatgtattccctgag 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gaattcattcaattctgttgtttctctgtttgtggttatcaaaaaaatgtattccctgag 578

                                                                       
Query: 65  aggctgtatcacagacacctatgtcaacaatgttacaatattatagaagagaaactagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aggctgtatcacagacacctatgtcaacaatgttacaatattatagaagagaaactagca 518

                                                                       
Query: 125 cacataacaacagatgaaggcgttttcctacccatggcattgctgttcatcaggaggact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cacataacaacagatgaaggcgttttcctacccatggcattgctgttcatcaggaggact 458

                                                                       
Query: 185 ccatgggcattgccatcttcctccagccccatgtagtaagggtgaacaccataagaattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccatgggcattgccatcttcctccagccccatgtagtaagggtgaacaccataagaattc 398

                                                                       
Query: 245 ttcttgtactgagagtaaagaggagaaaacagaatagtttaggaaaactgatccctgaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttcttgtactgagagtaaagaggagaaaacagaatagtttaggaaaactgatccctgaga 338

                                                                       
Query: 305 aagaaacaaaaattgcctgcttagttgtgtccagccttcttagcagagtaagctaaaaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aagaaacaaaaattgcctgcttagttgtgtccagccttcttagcagagtaagctaaaaac 278

                                                                       
Query: 365 ttgagggtcaaggcacatgaaaatgatccatttatctaatagcagaaggtaactgtccag 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 277 ttgagggtcaaggcacatgaaaatgatccatgtatctaatagcagaaggtaactgtccag 218

                                                    
Query: 425 tgaagctggggatgaaggagaaggaggaggagaaggaggag 465
           |||||||||||||||||||||||||||||   |||||||||
Sbjct: 217 tgaagctggggatgaaggagaaggaggag---aaggaggag 180


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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